Multicentre, prospective research protocol for development of a clonal neoantigen- reactive T cell therapy pipeline across multiple tumour types

M Grant, T Hou, F Kyle, K Miller, J Robinson, A Rogers, M Werner Sunderland, E Kotsiou, B Samways, P Kotecha, H Patel, N Charlaftis, S Kaur Lally, S Jide- Banwo, E Rologi, M Pruchniak, M Epstein, M Saggese, KR Newton, S Patel, S Quezada

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© Achilles Therapeutics UK Ltd. 2021

Background

  • Cancer cells accumulate mutations in their DNA over time. Many of the mutations lead to changes in the proteins encoded by the mutated genes, which can then be recognised by the immune system as 'foreign'
  • These cancer-specific 'neo-antigens' can potentially be exploited by immunotherapies such as Adoptive Cell Therapy (ACT) and Checkpoint Inhibitors (CPIs)
  • The mutations occurring before the initial cancer transformation event are carried by all of the cells of the growing cancer and are known as 'clonal' mutations
  • Mutations that subsequently occur are known as 'subclonal' mutations and are not present in all of the cancer cells, hence these are less likely to produce complete response, i.e. the elimination of the whole cancer cell population

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© Achilles Therapeutics UK Ltd. 2021

Achilles has developed proprietary technology to target all tumorcells

Tumors are clonal in origin and originate from a group of cells that are exactly the same

Achilles has developed proprietary technology (using TRACERx) to identity the original tumor mutations present on all cancer cells, clonal neoantigens

We are able to identify and target multiple clonal neoantigens with our Clonal Neoantigen Targeting T cell therapy, or cNeT

Tumors evolve, developing many new mutations resulting in heterogeneity that enables them to evade targeting1

To kill all of the tumor cells we believe you need to target the clonal neoantigens formed early in tumor evolution

Clonal neoantigens are present on primary tumors and all metastases

Non-confidential

© Achilles Therapeutics UK Ltd. 2021

1. Gerlinger et al., NEJM, 2012

Background

Tumour Infiltrating Lymphocyte (TIL)

  • TIL has delivered long-termdurable disease control in multiple solid tumor settings1-4
  • T cell expansion is non-specific with no control over which antigens are targeted and the approach results in subclonal targeting, reducing chances of complete disease control
  • Requires very high (non- physiological) levels of IL-2 that result in T cell exhaustion and reduced anti-tumor activity5

Red: clonal neoantigens

Purple, green and orange: subclonal

neoantigens

Clonal Neo-antigen Reactive T Cell (cNeT)

  • Ability to measure antigen-specific potency and monitor antigen-specific T cell engraftment and expansion
  • Provides precision targeting of clonal neoantigens shown to correlate with the anti-tumor activity of TIL6 and checkpoint inhibitors7
  • Clonal neoantigen targeting provides a means to target all the tumor cells
  • Using dendritic cells to drive T cell expansion reduces the need for IL-2 expansion, producing a fitter T cell

Non-confidential

© Achilles Therapeutics UK Ltd. 2021

1.

Besser et al., Clin. Can. Res., 2010

5. Gattinoni et al. J Clin Invest, 2005

2.

Forget et al., Clin. Can. Res. 2018

6. Lauss et al., Nature Comm, 2017

3.

Rosenberg et al., Clin. Can. Res. 2015

7. Snyder et al., NEJM, 2014

4.

Moffitt Investigator Sponsored Study update at AACR April 2020

Background

TUMOR

T cells

Clonal Neoantigen-

reactive T cell (cNeT)

Genomic analysis

Selective expansion

product

identifies targets

of T cells which

present on all

target clonal

tumor cells

neoantigens

Reinfuse

BLOOD

Dendritic Cells

non-confidential

© Achilles Therapeutics plc 2021

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Achilles Therapeutics plc published this content on 22 October 2021 and is solely responsible for the information contained therein. Distributed by Public, unedited and unaltered, on 22 October 2021 11:43:04 UTC.