The following discussion and analysis of our financial condition and results of operations should be read in conjunction with the unaudited consolidated financial statements and notes thereto included elsewhere in this Quarterly Report on Form 10-Q, or Form 10-Q, and the audited consolidated financial statements and notes thereto for our fiscal year ended September 30, 2021 included in our Annual Report on Form 10-K for that fiscal year which is referred to as our 2021 Form 10-K. Please refer to our note regarding forward-looking statements on page 2 of this Form 10-Q, which is incorporated herein by this reference.

The Enanta name and logo are our trademarks. This Form 10-Q also includes trademarks, trade names and service marks of other persons. All other trademarks, trade names and service marks appearing in this Form 10-Q are the property of their respective owners.

Overview

We are a biotechnology company that uses our robust, chemistry-driven approach and drug discovery capabilities to become a leader in the discovery and development of small molecule drugs for the treatment of viral infections and liver diseases. We discovered glecaprevir, the second of two protease inhibitors discovered and developed through our collaboration with AbbVie for the treatment of chronic hepatitis C virus, or HCV. Glecaprevir is co-formulated as part of AbbVie's leading brand of direct-acting antiviral, or DAA, combination treatment for HCV, which is marketed under the tradenames MAVYRET® (U.S.) and MAVIRET® (ex-U.S.) (glecaprevir/pibrentasvir). Our royalties from our AbbVie collaboration provide us funding to support our wholly-owned research and development programs, which are primarily focused on the following disease targets:

Respiratory syncytial virus, or RSV, the most common cause of bronchiolitis and pneumonia in young children and a significant cause of respiratory illness in older adults, with estimates suggesting that on average each year RSV leads to 3 million hospitalizations globally in children under 5 years old and 177,000 hospitalizations in the U.S. in adults over the age of 65;

SARS-CoV-2, the virus that causes COVID-19, as well as other coronaviruses;

Hepatitis B virus, or HBV, the most prevalent chronic hepatitis, which is estimated by the World Health Organization to affect close to 300 million individuals worldwide; and

Human metapneumovirus, or hMPV, a virus that is the second most common cause of lower respiratory tract infections in children behind RSV, with reinfection occurring throughout life.

We had $292.7 million in cash, cash equivalents and short-term and long-term marketable securities at June 30, 2022. In fiscal 2021, we earned $97.1 million and $65.8 million during the nine months ended June 30,2022 in product royalties on AbbVie's net sales of its HCV regimens. We expect cash flows from our continuing HCV royalties and our existing financial resources will allow us to continue to fund our wholly-owned research and development programs for the next two years.

Our Wholly-Owned Programs

Our primary wholly-owned research and development programs are in virology, namely RSV, SARS-CoV-2, HBV and hMPV:

RSV: We have a clinical stage program for RSV, for which the lead asset is EDP-938, a potent N-protein inhibitor of activity of both major subgroups of RSV. EDP-938 has Fast Track designation from the U.S. Food and Drug Administration (FDA). In addition, we recently announced a clinical candidate, EDP-323, which is an inhibitor of the RSV L-protein.



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EDP-938 - N-protein Inhibitor Candidate: We have studied EDP-938 in two Phase 2 studies that were designed to be proof-of-concept and exploratory to understand better viral response in the context of RSV infection. These studies were conducted in otherwise healthy adults. The first study was the challenge study, which was reported out in mid-2019. The second study, known as RSVP, was designed to confirm the challenge study findings in an adult outpatient population with community-acquired RSV infection in order to provide us additional information on symptom alleviation and viral load decline. In May 2022, we announced topline results for RSVP, noting that EDP-938 did not meet the primary endpoint of reduction in total symptom score compared to placebo, or the secondary antiviral endpoints. However, a statistically significant difference in the number of subjects achieving undetectable RSV RNA at the end of treatment at Day 5 was observed with EDP-938 compared to placebo (p=0.033). Further, EDP-938 demonstrated a favorable safety profile, consistent with that observed in approximately 500 subjects exposed to date. Based on the growing safety profile of EDP-938 and differences in the range of the course of RSV infection in higher risk populations, which have always been our target populations, we believe that EDP-938 merits further study. We continue to believe that EDP-938 has the



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greatest potential to show optimal efficacy in high-risk populations, as these patients have reduced RSV immunity which manifests in a higher and longer duration of viral load and greater disease severity, allowing a bigger window to realize the full potential of EDP-938. We are continuing to evaluate EDP-938 in high-risk populations in the following ongoing and planned clinical studies, including pediatric patients, adult hematopoietic stem cell recipients and high-risk adults, all of which have the most significant unmet need:



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RSVPEDs: We have initiated a Phase 2 RSV study called RSVPEDs in pediatric patients. In this dose-ranging, randomized, double-blind, placebo-controlled study, we plan to enroll 90 infants and children aged 28 days to 36 months with RSV-associated respiratory tract infection, including both hospitalized and non-hospitalized patients who will be dosed in up to four age cohorts and will receive EDP-938 or a placebo for five days. The study will be conducted in two parts. Part 1 will evaluate multiple ascending doses in each age cohort, with a primary endpoint of safety, tolerability, and pharmacokinetics. Part 2 will evaluate the selected dose from Part 1 across the age cohorts, with a primary endpoint of antiviral activity.



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RSVTx: We have also initiated a Phase 2b study called RSVTx in adult hematopoietic cell transplant recipients with acute RSV infection and symptoms of upper respiratory tract infection. We plan to enroll approximately 200 adult subjects 18 to 75 years of age, within 72 hours of symptom onset, who will receive EDP-938 or placebo for 21 days. The primary endpoint is the incidence of lower respiratory tract complications within 28 days of enrollment, while secondary endpoints include change from baseline in RSV RNA viral load, safety and pharmacokinetics.



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RSV-High Risk: Later this year we are planning to initiate another Phase 2b study in high-risk adults, including the elderly and those who have asthma, chronic obstructive pulmonary disease (COPD), or congestive heart failure.



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The prevalence of RSV has not yet returned to typical levels nor is it following any normal seasonal pattern since the COVID-19 pandemic began. The future incidence and timing of RSV infections remains highly unpredictable and thus may continue to impact enrollment in our ongoing RSV trials.



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EDP-323 - L-protein Inhibitor Candidate: Our newest clinical candidate for RSV is a novel oral, direct-acting antiviral selectively targeting the RSV L-protein, a viral RNA-dependent RNA polymerase enzyme that contains multiple enzymatic activities required for RSV replication. EDP-323 has shown nanomolar potency against RSV-A and RSV-B in vitro and is not expected to have cross-resistance to other classes of inhibitors. EDP-323 has the potential to be used alone or in combination with other RSV mechanisms, such as EDP-938, to broaden the treatment window or addressable patient populations. We plan to initiate a Phase 1 study of EDP-323 in the second half of calendar 2022.

COVID-19: We have been leveraging our expertise in protease inhibitors to discover new compounds specifically designed to target the SARS-CoV-2 virus and potentially other coronaviruses. Our first clinical candidate for COVID-19 is EDP-235, an oral inhibitor of coronavirus 3CL protease, also referred to as the main coronavirus protease, or Mpro, which has been granted Fast Track designation from the FDA. In addition to SARS-CoV-2, EDP-235 has potent antiviral activity against other human coronaviruses, enabling the potential for a pan-coronavirus treatment, including possibly coronaviruses that may infect human populations in the future.



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EDP-235 - Protease Inhibitor Candidate - In July 2022, we completed a Phase 1 study and reported positive topline results. This first-in-human, randomized, double-blind, placebo-controlled study enrolled healthy volunteers to evaluate the safety, tolerability, and pharmacokinetics, or PK, of oral EDP-235 in single ascending doses (SAD) and multiple ascending doses (MAD) for seven days, and the effect of food. Data from the Phase 1 study demonstrated EDP-235 was generally safe and well-tolerated up to 400 mg for seven days with strong exposure multiples over the EC90, which is a measure of potency, specifically the concentration of drug that results in 90% inhibition of viral replication in vitro. EDP-235 200 mg taken once daily with food resulted in mean trough plasma levels at steady state that were 3-fold and 6-fold over the plasma-protein-adjusted EC90 for the Alpha variant and Delta variant, respectively, while 400 mg resulted in levels that were 6-fold and 12-fold over the plasma-protein-adjusted EC90 for the respective variants. These target exposure multiples were achieved without the need for ritonavir boosting and its associated drug-drug interactions. EDP-235 is projected to have four times higher drug levels in lung tissue compared to plasma, which would be expected to drive the 400 mg multiples to 24-fold and 48-fold for the respective variants. Adverse events were infrequent and mild. Based on these positive data, we are targeting a fourth quarter initiation of a Phase 2 study exploring doses of 200 mg and 400 mg once-daily, pending review with the FDA.

HBV: Our lead clinical candidate for the treatment of chronic infection with hepatitis B virus, or HBV, is EDP-514, a core inhibitor that displays potent anti-HBV activity in vitro at multiple points in the HBV lifecycle. Our goal is to develop a



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combination therapy approach, including existing approved treatments such as a nucleoside reverse transcriptase inhibitor (NUC), with EDP-514 and one or more other mechanisms, which could lead to a functional cure for patients with chronic HBV infection.



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EDP-514 - Core Inhibitor Candidate - In June 2022, final data from two of our Phase 1b studies of EDP-514 were presented at The International Liver CongressTM 2022. EDP-514, which has Fast Track designation from the FDA, has been shown to be safe and potent in two different chronic HBV patient populations - those who have a high viral load, whom we refer to as viremic patients, and those who are on a treatment with a nucleoside reverse transcriptase inhibitor, whom we refer to as NUC-suppressed patients. Based on these data, we remain convinced that EDP-514 has the potential to be a best-in-class core inhibitor for HBV.

hMPV: Since announcing our new drug discovery effort for human metapneumovirus, or hMPV, in January 2020, we have been optimizing nanomolar inhibitor leads against this virus and are working toward selecting our first clinical candidate for this indication later in the first half of 2023.

We have utilized our internal chemistry and drug discovery capabilities to generate all of our development-stage programs. We continue to invest substantial resources in research programs to discover back-up compounds as well as new compounds targeting different mechanisms of action, both in our disease areas of focus as well as potentially in other disease areas.

The following table summarizes our product development pipeline in our virology and liver disease programs:

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Our Royalty Revenue Collaboration

Our royalty revenue is generated through our Collaborative Development and License Agreement with AbbVie, under which we have discovered and out-licensed to AbbVie two protease inhibitor compounds that have been clinically tested, manufactured, and commercialized by AbbVie as part of its combination regimens for HCV.

Glecaprevir is the protease inhibitor we discovered that was developed by AbbVie in a fixed-dose combination with its NS5A inhibitor, pibrentasvir, for the treatment of HCV. This patented combination, currently marketed under the brand names MAVYRET® (U.S.) and MAVIRET® (ex-U.S.), is referred to in this report as MAVYRET/MAVIRET. Since August 2017, substantially all of our royalty revenue has been derived from AbbVie's net sales of MAVYRET/MAVIRET. Our ongoing royalty revenues from this regimen consist of annually tiered, double-digit, per-product royalties on 50% of the calendar year net sales of the 2-DAA glecaprevir/pibrentasvir combination in MAVYRET/MAVIRET. The annual royalty tiers return to the lowest tier for sales on and after each January 1.



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COVID-19 Update

The current COVID-19 pandemic has presented substantial challenges for public health and economies around the world, and it is affecting our clinical trials, our royalty revenues received from AbbVie, and our business operations. The full extent to which the COVID-19 pandemic will directly or indirectly impact our business, results of operations and financial condition will depend on future developments that are highly uncertain and cannot be accurately predicted, including new information that may emerge concerning COVID-19 and public health actions taken to contain it and roll out vaccinations worldwide, as well as the cumulative economic impact of all of these factors. Additionally, as new, more infectious variants emerge, such as the Omicron variants, it is possible that the impact of the pandemic on our business may continue or change.

We are continuing to assess and manage the potential impact of the COVID-19 pandemic on our business and operations, including our expenses, clinical trials and royalty revenue. While the majority of our employees were working from home during the first 18 months of the pandemic, as we prepare to transition back to working on site, the majority of our employees are now working hybrid schedules while our scientific personnel are working full-time in our laboratories.

Our third-party contract manufacturing partners continue to operate at or near normal levels producing drug substance and drug product for our research and clinical development programs, so we currently do not anticipate any material interruptions in our supply chain, but it is possible that may change. In addition, the mitigation steps to manage the COVID-19 pandemic in the past two years have suppressed the global incidence of RSV and respiratory illnesses other than COVID-19, which has adversely affected enrollment in our RSV studies. We also continue to experience a variety of more minor interruptions and complications in our clinical trials, such as limitations in clinical trial supplies other than drug product, as well as local changes in COVID-19 impacts at individual trial sites. While our ongoing trials are proceeding, it is unclear what further impact, if any, the COVID-19 pandemic may have on the timeline for enrollment and/or completion of all or any of our clinical trials.

Regarding our royalty revenue, we have continued to report lower royalty revenue during our fiscal 2021 and into 2022 as compared to periods ending before March 2020 due to the worldwide impact of the COVID-19 pandemic. The pandemic resulted in a decline in patient volumes, HCV diagnoses, HCV prescriptions and sales of MAVYRET/MAVIRET.

While the evolving impact of COVID-19 will likely continue to affect aspects of our business, including those described above, we remain capable of funding our research and development programs for the next two years with the current level of royalty revenue and our existing cash and short-term and long-term investments, which totaled $292.7 million at June 30, 2022.

Please see Item 1A "Risk Factors" in this Form 10-Q for additional discussion of risks and potential risks of the COVID-19 pandemic on our business, results of operations and financial condition.

Financial Operations Overview

We are currently funding all research and development for our wholly-owned programs, which are targeted toward the discovery and development of novel compounds for the treatment of viral infections and liver diseases. We currently have two Phase 2 studies ongoing for our wholly-owned program in RSV and one Phase 1 study in our SARS-CoV-2 program. We are also progressing other compounds into preclinical development in our RSV, SARS-CoV-2 and HBV programs, as well as pursuing drug discovery efforts in hMPV.

During fiscal 2021 and into 2022, our business has been impacted by the COVID-19 pandemic. Specifically, AbbVie continues to report lower HCV revenues as a result of lower treated patient volumes. In addition, we have experienced slower enrollment in the clinical studies in our RSV program as a result of suppression of the incidence of respiratory illnesses globally (other than COVID-19) due to mitigation measures intended to suppress SARS-CoV-2.

As a result of the timing of our clinical and preclinical development programs, we expect our research and development expenses to fluctuate from period to period. However, in the coming years, we expect our research and development expenses generally to increase as our wholly-owned programs advance.

We are funding our operations primarily through royalty payments received under our collaboration agreement with AbbVie and our existing cash, cash equivalents, and short-term and long-term marketable securities. Our revenue is currently dependent on royalty payments we receive from AbbVie on its sales of MAVYRET/MAVIRET. Absent a significant increase in the level of AbbVie's MAVYRET/MAVIRET sales that generate our royalty revenue and, given the planned levels of our future expenditures for the advancement of our internally developed compounds, we expect to continue to have net losses in fiscal 2022.

Internal Programs

As our internal product candidates are currently in Phase 1 or Phase 2 clinical development, we have not generated any revenue from our own product sales and do not expect to generate any revenue from product sales derived from these product candidates for at least the next several years.



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The following table summarizes our operating expenses for the three and nine months ended June 30, 2022 and 2021:



Operating Expenses
                               Three Months Ended           Nine Months Ended
                                    June 30,                    June 30,
                                2022          2021         2022          2021
                                               (in thousands)
Research and development     $   39,090     $ 46,994     $ 129,726     $ 125,165
General and administrative       12,929        8,477        32,913        24,180
Total operating expenses     $   52,019     $ 55,471     $ 162,639     $ 149,345

Research and Development Expenses

Research and development expenses consist of costs incurred to conduct basic research, such as the discovery and development of novel small molecules as therapeutics, as well as any external expenses of preclinical and clinical development activities. We expense all costs of research and development as incurred. These expenses consist primarily of:

personnel costs, including salaries, related benefits and stock-based compensation for employees engaged in scientific research and development functions;

third-party contract costs relating to research, formulation, manufacturing, preclinical study and clinical trial activities;

laboratory consumables;

allocated facility-related costs; and

third-party license fees.

Project-specific expenses reflect costs directly attributable to our clinical development candidates and preclinical candidates nominated and selected for further development. The remaining research and development expenses are reflected in research and drug discovery, which represents early-stage drug discovery programs. At any given time, we typically have several active early-stage research and drug discovery projects. Our internal resources, employees, and infrastructure are not directly tied to any individual research or drug discovery project and are typically deployed across multiple projects. As such, we do not report information regarding costs incurred for our early-stage research and drug discovery programs on a project-specific basis. We expect that our research and development expenses will continue to increase in the future as we advance our research and development programs.

Our research and drug discovery and development programs are in the early stages; therefore, the successful development of our product candidates is highly uncertain and may not result in approved products. Completion dates and completion costs can vary significantly for each product candidate and are difficult to predict. Given the uncertainty associated with clinical trial enrollments, particularly in the context of the COVID-19 pandemic, and the risks inherent in the development process, we are unable to determine the duration and completion costs of the current or future clinical trials of our product candidates or if, or to what extent, we will generate revenue from the commercialization and sale of any of our product candidates. We anticipate that we will make determinations as to which development programs to pursue and how much funding to direct to each program on an ongoing basis in response to the preclinical and clinical success and prospects of each product candidate, as well as ongoing assessments of the commercial potential of each product candidate.

General and Administrative Expenses

General and administrative expenses consist primarily of personnel costs, which include salaries, related benefits, and stock-based compensation, for our executive, finance, business and corporate development, and other administrative functions. General and administrative expenses also include travel expenses, allocated facility-related costs not otherwise included in research and development expenses, directors and officers' liability insurance premiums, and professional fees for auditing, tax, and legal services and patent expenses.

We expect that general and administrative expenses will increase in the future primarily due to the ongoing expansion of our operating activities in support of our research and development programs, as well as potential additional costs associated with operating a growing publicly traded company.

Other Income, Net

Other income, net consists of interest and investment income and any change in fair value of our outstanding Series 1 nonconvertible preferred stock. Interest income consists of interest earned on our cash equivalents and short-term and long-term marketable securities balances as well as interest earned on any refunds received from tax authorities. Investment income consists of the amortization or accretion of any purchased premium or discount on our short-term and long-term marketable securities. The change in fair value of



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our Series 1 nonconvertible preferred stock relates to the remeasurement of these financial instruments from period to period as these instruments may require a transfer of assets because of the liquidation preference features of the underlying instrument.

Income Tax Benefit

The income tax benefit is generally the result of federal and state tax benefits, releases of tax reserves or tax refunds due as a result of tax losses generated in the period which are able to be carried back to prior years under the Coronavirus Aid, Relief and Economic Security Act ("CARES Act"). The benefit of the CARES Act is not available beginning in fiscal 2022.

Results of Operations

Comparison of the Three Months Ended June 30, 2022 and 2021



                               Three Months Ended
                                    June 30,
                                2022          2021
                                 (in thousands)
Royalty revenue              $   19,479     $ 21,624
Research and development         39,090       46,994
General and administrative       12,929        8,477
Other income, net                   393          439
Income tax benefit                  447        9,384


Royalty Revenue

Our revenue consists of royalties received under our collaboration agreement with AbbVie, substantially all of which are now derived from sales of MAVYRET/MAVIRET. We are entitled to annually tiered, double-digit, per-product royalties on 50% of all net sales of MAVYRET/MAVIRET. Our royalty revenues eligible to be earned in the future will potentially fluctuate depending on AbbVie's HCV market share, the pricing of the MAVYRET/MAVIRET regimen and the number of patients treated with that regimen. Beginning with each January 1, the cumulative net sales of each royalty-bearing product start at zero for purposes of calculating the tiered royalties on a product-by-product basis.

We recognized royalty revenue of $19.5 million during the three months ended June 30,2022 as compared to $21.6 million during the three months ended June 30, 2021. The $2.1 million decrease in royalty revenue was due to AbbVie's lower reported HCV sales as compared to the comparable period in 2021. HCV patient volumes continue to remain below pre-COVID-19 levels.

Research and development expenses



                                            Three Months Ended
                                                 June 30,
                                             2022          2021
                                              (in thousands)
R&D programs:
Virology                                  $   34,042     $ 34,947
Liver disease (non-viral)                      4,540       11,442
Other                                            508          605

Total research and development expenses $ 39,090 $ 46,994






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The level of research and development expenses for the three months ended June 30,2022 decreased by $7.9 million compared to the same period in 2021. The decrease was primarily driven by a decrease in clinical trial costs due to timing of our studies in our virology and liver disease programs. For our virology program, we had two Phase 2 studies of EDP-938 in RSV during the quarter and one Phase 1 study of EDP-235 in our COVID-19 program which was initiated during the second quarter of 2022. For our liver disease program, we announced in October 2021 that we would not continue to develop our FXR agonists for non-alcoholic steatohepatitis and instead are pursuing an out-license strategy for further development. Expenses related to this program are expected to continue to decline as we close out the development program. In the prior year, we had two Phase 1 clinical studies of EDP-514 in chronic HBV patients and three Phase 2 studies of EDP-938 in RSV in our virology program as well as two clinical studies in our liver disease program.

In the near term, our clinical trial expenses could fluctuate if the impact of the COVID-19 pandemic continues through calendar 2022 and negatively impacts patient recruitment and monitoring. In the coming years, we expect our research and development expenses to increase as our wholly-owned programs advance, subject to any longer-term impact of the COVID-19 pandemic.

General and administrative expenses

General and administrative expenses increased by $4.5 million for the three months ended June 30,2022 compared to the same period in 2021. The increase was primarily due to increases in headcount and related compensation expense in support of expansion of our research and development operations.

Other income, net

Other income, net, decreased less than $0.1 million for the three months ended June 30, 2022 as compared to the same period in 2021. The decrease was due to lower invested cash balances as of June 30, 2022 as compared to the prior year.

Income tax benefit

For the three months ended June 30, 2022 and 2021, we recorded an income tax benefit of $0.4 million and $9.4 million, respectively. We recorded an income tax benefit in the three months ended June 30, 2022 due to a release of a state tax reserve during the period while in the prior period, we recorded a tax benefit due to a federal net operating loss carryback available under the CARES Act for our fiscal year 2021, which is no longer available after September 30, 2021. We continue to record a valuation allowance against substantially all of our deferred tax assets as it is more likely than not that those tax benefits will not be realized in the future.

Results of Operations

Comparison of the Nine Months Ended June 30, 2022 and 2021




                                Nine Months Ended
                                    June 30,
                               2022          2021
                                 (in thousands)
Royalty Revenue              $  65,843     $  73,499
Research and development       129,726       125,165
General and administrative      32,913        24,180
Other income, net                  942         1,661
Income tax benefit                 447        19,788


Royalty Revenue

We recognized royalty revenue of $65.8 million during the nine months ended June 30, 2022 as compared to $73.5 million during the nine months ended June 30, 2021. The $7.7 million decrease in royalty revenue was due to AbbVie's lower reported HCV sales on a year to date basis as compared to the comparable period in 2021.

Research and development expenses



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                                             Nine Months Ended
                                                 June 30,
                                            2022          2021
                                              (in thousands)
R&D programs:
Virology                                  $ 112,476     $  89,416
Liver disease (non-viral)                    15,641        33,527
Other                                         1,609         2,222

Total research and development expenses $ 129,726 $ 125,165

The level of research and development expenses for the nine months ended June 30, 2022 increased by $4.6 million compared to the same period in 2021. The increase was primarily driven by an increase in manufacturing costs in support of our clinical studies in our virology program, partially offset by a decrease in clinical trial expenses in our virology and liver disease programs.

General and administrative expenses

General and administrative expenses increased by $8.7 million for the nine months ended June 30, 2022 compared to the same period in 2021. The increase was primarily due to an increase in headcount and related compensation expense in support of expansion of our research and development operations.

Income tax benefit

For the nine months ended June 30, 2022 and 2021, we recorded an income tax benefit of $0.4 million and $19.8 million, respectively. We recorded an income tax benefit in the nine months ended June 30, 2022 due to a release of a state tax reserve during the period and recorded an income tax benefit in the prior period due to a federal net operating loss carryback available under the CARES Act for our fiscal year 2021, which is no longer available after September 30, 2021.

Liquidity and Capital Resources

We fund our operations with cash flows from our royalty revenue and our existing financial resources. At June 30, 2022, our principal sources of liquidity were cash, cash equivalents and short-term and long-term marketable securities totaling $292.7 million, compared to $352.4 million at September 30, 2021.



The following table shows a summary of our cash flows for the nine months ended
June 30, 2022 and 2021:


                                                                Nine Months Ended
                                                                    June 30,
                                                               2022          2021
                                                                 (in thousands)
Cash provided by (used in):
Operating activities                                         $ (69,248 )   $ (48,975 )
Investing activities                                            26,666       (35,692 )
Financing activities                                            17,103         2,137

Net decrease in cash, cash equivalents and restricted cash $ (25,479 ) $ (82,530 )

Net cash used in operating activities

Cash used in operating activities was $69.2 million for the nine months ended June 30, 2022 as compared to cash used in operating activities of $49.0 million for the same period in 2021. Our cash used in operating activities increased $20.3 million, driven by an increase in research and development costs incurred year-over-year which was partially offset by a federal tax refund of $8.5 million received in 2022.

For the foreseeable future, we expect to continue to incur substantial costs associated with research and development for our internally developed programs.



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Net cash provided by (used in) investing activities

Cash provided by investing activities was $26.7 million for the nine months ended June 30, 2022 as compared to cash used in investing activities of $35.7 million for the same period in 2021. Our cash provided by investing activities increased $62.4 million, driven by timing of purchases, sales and maturities of marketable securities in 2022 compared to 2021.

Net cash provided by financing activities

Cash provided by financing activities was $17.1 million for the nine months ended June 30, 2022 as compared to cash provided by financing activities of $2.1 million for the same period in 2021. Our cash provided by financing activities increased $15.0 million, driven by an increase in stock option exercises due to an increase in our stock price during the first half of 2022 compared to 2021.

Funding requirements

As of June 30, 2022 we had $292.7 million in cash, cash equivalents and short-term and long-term marketable securities. We believe that our existing cash, cash equivalents and marketable securities as of June 30, 2022 will be sufficient to meet our anticipated cash requirements for the next two years. However, our forecast of the period of time through which our financial resources will be adequate to support our operations is a forward-looking statement that involves risks and uncertainties, and actual results could vary materially.

Our future capital requirements are difficult to forecast and will depend on many factors, including:

the amount of royalties generated from MAVYRET/MAVIRET sales under our existing collaboration with AbbVie;

any continuing impact of the COVID-19 pandemic on the numbers of treated HCV patients;

the number and characteristics of our research and development programs;

the scope, progress, results and costs of researching and developing any of our product candidates on our own, including conducting advanced clinical trials;

delays and additional expense in our clinical trials as a result of the COVID-19 pandemic continuing;

the cost of manufacturing our product candidates for clinical development and any products we successfully commercialize independently;

our ability to establish new collaborations, licensing or other arrangements, if any, and the financial terms of such arrangements;

opportunities to in-license or otherwise acquire new technologies and therapeutic candidates;

costs associated with prosecuting our patent infringement suit regarding use of a coronavirus 3CL protease inhibitor in Paxlovid, Pfizer's antiviral treatment for COVID-19;

the timing of, and the costs involved in, obtaining regulatory approvals for any product candidates we develop independently;

the cost of commercialization activities, if any, of any product candidates we develop independently that are approved for sale, including marketing, sales and distribution costs;

the timing and amount of any sales of our product candidates, if any, or royalties thereon;

the costs involved in preparing, filing, prosecuting, maintaining, defending and enforcing patents, including any litigation costs and the outcomes of any such litigation; and

potential fluctuations in foreign currency exchange rates.



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Off-Balance Sheet Arrangements

We do not engage in any off-balance sheet financing activities. We do not have any interest in entities referred to as variable interest entities, which include special purpose entities and other structured finance entities.

Contractual Obligations and Commitments

In our 2021 Form 10-K Part II, Item 7, Management's Discussion and Analysis of Financial Conditions and Results of Operations, under the heading "Contractual Obligations and Commitments", we have described our commitments and contingencies.

During the nine months ended June 30, 2022, we exercised our option to extend our lease located at 500 Arsenal Street in Watertown, Massachusetts for an additional 5 years through September 1, 2027. The updated minimum lease payments through the remainder of the lease totaled $20.3 million.

We also entered into a new lease agreement for lab and office space in Watertown, Massachusetts in order to accommodate our growing headcount and amended our existing lease agreement at 400 Talcott Avenue for additional office space. The new lab and office space will be located at Arsenal on the Charles in Watertown, Massachusetts at a to-be-constructed facility. We will rent approximately seventy-three thousand square feet of space over a 10 year period which we expect to gain access to perform tenant improvements in October 2023. The lease also contains a tenant improvement allowance of $15.2 million. The estimated minimum lease payments as a result of the new lease total $76.5 million.

The 400 Talcott Avenue lease was also amended to add approximately twenty thousand square feet of additional office space and extend the lease term through May 2034 to coincide with the lease end date of the to be constructed facility at Arsenal on the Charles. We expect to spend approximately $7.6 million in capital expenses for the additional space, which primarily relate to tenant improvements. We are also eligible to receive a tenant improvement allowance from the landlord of up to $2.5 million.

Total estimated minimum lease payments for the next 5 years and thereafter under our existing facility and leased equipment agreements and subject to the completion of the to-be-constructed facility at Arsenal on the Charles are $4.7 million in 2023, $6.7 million in 2024, $12.0 million in 2025, $12.4 million in 2026, $12.4 million in 2027 and $65.7 million thereafter.

Critical Accounting Policies

Our consolidated financial statements are prepared in accordance with accounting principles generally accepted in the United States of America. The preparation of our consolidated financial statements and related disclosures requires us to make estimates and assumptions that affect the reported amount of assets, liabilities, revenue, costs and expenses, and related disclosures. We evaluate our estimates and assumptions on an ongoing basis. Our actual results may differ from these estimates under different assumptions and conditions. See our Annual Report on Form 10-K for the fiscal year ended September 30, 2021 (referred to as our 2021 Form 10-K) for information about critical accounting policies as well as a description of our other significant accounting policies.

Recently Issued Accounting Pronouncements

A description of recently issued accounting pronouncements that may potentially impact our financial position and results of operations is set forth in Note 2 to the consolidated financial statements included in this Form 10-Q.

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