Management's discussion and analysis of our financial condition and results of operations should be read together with our 2020 10-K and our unaudited condensed consolidated financial statements and accompanying notes and other disclosures included in this Quarterly Report on Form 10-Q. Overview We are a biopharmaceutical company dedicated to discovering and developing novel cancer immunotherapies using our proprietary ATLASTM platform. The ATLAS platform can profile each patient's CD4+ and CD8+ T cell immune responses to every potential target or "antigen" identified by next-generation sequencing of that patient's tumor. ATLAS zeroes in on both antigens that activate anti-tumor T cell responses and inhibitory antigens, or InhibigensTM, that drive pro-tumor immune responses. We believe this approach ensures that cancer immunotherapies, such as cellular therapies and vaccines, focus T cell responses on the tumor antigens most vulnerable to T cell targeting. Consequently, we believe that ATLAS may enable more immunogenic and efficacious cancer immunotherapies. GEN-011 is an investigational adoptive T cell therapy comprising neoantigen-targeted peripheral T cells ("NPTs"). NPTs are peripheral blood-derived T cells targeted to ATLAS-identified neoantigens. By employing ATLAS to optimize neoantigen selection and by using T cells derived from peripheral blood, we believe GEN-011 will enable potential patient efficacy, accessibility and cost advantages over other autologous T cell therapies. We are conducting a first-in-human clinical trial (the "TiTANTM trial") for GEN-011, and in the second quarter of 2021, we dosed our first patient in the trial. GEN-009 is an investigational neoantigen vaccine delivering adjuvanted synthetic long peptides from ATLAS-identified neoantigens. We reported long-term immunogenicity and clinical response data from our GEN-009 neoantigen vaccine Phase 1 clinical trial inJune 2021 , and we continue to monitor patients to further evaluate these efficacy signals. ATLAS platform Harnessing and directing T cells to kill tumor cells is increasingly viewed as having potential to treat many cancers. Cellular therapies or vaccines employing this approach may be most effective when targeting specific differences from normal tissue present in the patient, such as antigens arising from genetic mutations or cancer-causing viruses. However, the discovery of optimal antigens for such immunotherapies has been particularly challenging for two reasons. First, the number of candidate antigens can be very large, with up to thousands of candidates per patient in some cancers. Second, the genetic diversity of human T cell responses means that effective antigens may vary from person to person. An effective antigen selection system must therefore account both for each patient's tumor and for their T cell repertoire. ATLAS selects antigens through an ex vivo assay that unveils CD4+ and CD8+ T cell immune responses each patient has made to nearly any possible tumor-specific antigen, including candidate neoantigens, tumor-associated antigens and tumor-associated viral antigens. In doing so, we believe that ATLAS provides the most comprehensive and accurate system for identifying the right and wrong antigens for cancer immunotherapies. Previously, all candidate antigens were thought either to be targets of effective anti-tumor responses (stimulatory) or irrelevant. However, using ATLAS, we have identified Inhibigens and demonstrated, in preclinical studies, that such antigens can promote rapid tumor growth, reduce or eliminate the protection of an otherwise effective vaccine, and dampen or reverse the effects of checkpoint inhibitors ("CPI"). We have also demonstrated that classical antigen prediction methodologies often mischaracterize Inhibigens as stimulatory. We therefore believe that both by identifying the optimal antigens and by excluding Inhibigens, ATLAS enables differentiated immune responses and clinical efficacy. We believe ATLAS could have beneficial uses beyond cancer. We have previously demonstrated its effectiveness in identifying novel protective antigens for infectious disease therapies, and we believe it also could provide benefits in autoimmune and other disease therapies. While we believe Inhibigens should be avoided in cancer immunotherapies, they could prove to be beneficial in other therapies. ATLAS could be a key tool in optimizing antigen selection for therapies across a number of diseases. Intellectual property Our ATLAS and immuno-oncology intellectual property portfolio comprises nine patent families and one additional potential patent family, all but one of which are wholly owned by us. The first patent family, in-licensed fromHarvard University , is directed to one arm of the ATLAS method for identifying antigens. This patent family is comprised of issuedUnited States ("U.S.") patents, with patent terms ranging from 2027 to 2031, as well as granted foreign patents. The second family is directed to expanded ATLAS methods for identifying antigens, as currently practiced by us. This family is comprised of issuedU.S. patents, with patent terms ranging from 2029 to 2030, as well as granted foreign patents and pendingU.S. and foreign applications. The third family is directed to ATLAS-based methods for selecting or deselecting Inhibigens and stimulatory antigens, cancer diagnosis, prognosis and patient selection, as well as related compositions. This patent family is comprised of an issuedU.S. patent with a patent term to 2038, pending applications in eleven foreign jurisdictions, and a pendingU.S. application. Additional patents issuing from these applications are expected to have patent terms until at least 2038. The fourth, fifth and sixth families are directed to various methods using ATLAS-identified antigens. These families comprise pendingU.S. and foreign applications. Patents issuing from these applications are expected to have patent terms until at least 2039. The three further families and one additional potential family currently comprise Patent Cooperation Treaty ("PCT") applications or aU.S. provisional application and are directed to further methods using ATLAS-identified antigens, to dose regimens for GEN-009, and to our cell-based therapy GEN-011. 18 --------------------------------------------------------------------------------Immuno -oncology programs GEN-011 We believe that GEN-011 represents a new category of adoptive T cell therapy for solid tumors, neoantigen-targeted peripheral T cells ("NPTs"). The first neoantigen-targeted T cell therapy to demonstrate clinical efficacy in patients with solid tumors is tumor-infiltrating lymphocyte ("TIL") therapy. TILs consist of a subset of lymphocytes that have invaded a tumor but, importantly, are not all necessarily specific for tumor antigens. TIL therapy requires a fresh, uncontaminated, viable tumor resection from each patient, from which TILs will be obtained. These TILs are then non-specifically expanded ex vivo in the presence of high dose interleukin-2 ("IL-2") and infused into that same patient, who has undergone lymphodepletion preconditioning, followed by high dose IL-2 treatment. In certain patients with solid tumors resistant to CPI therapy, TIL therapy has resulted in durable clinical responses. GEN-011 differs from TIL therapy in two critical ways. First, we use ATLAS to design the product to be highly specific for the antigens of anti-tumor T cell responses. Second, we rely on T cells extracted from peripheral blood, which are readily available and we believe have greater potential for proliferation and activity than TILs. We believe these differences may result in GEN-011, if approved, offering efficacy, patient accessibility and cost advantages over other neoantigen-targeting solid tumor adoptive T cell therapies. The potential efficacy advantages derive from the following product features: •Targeting up to 30 tumor-specific antigens simultaneously to limit tumor escape, with minimal bystander, non-tumor-specific T cells; •Avoiding T cells specific for Inhibigens that may be detrimental to clinical response; •Including both CD4+ and CD8+ tumor antigen-specific T cells; and •Using peripheral blood-derived T cells, which are believed to have potential for superior activity and persistence. The potential patient accessibility and cost advantages derive from the fact that: •No extra surgery or viable tumor is required as starter material; •GEN-011 can treat any patient, while some adoptive T cell therapies engineer T cells for applicability to certain human leukocyte antigen types, often limiting their clinical utility to certain subsets of western Caucasians; and •The GEN-011 cell expansion process does not require T cell receptor ("TCR") vector design or transduction. Across more than 15 development and engineering runs in blood derived from cancer patients and healthy donors, we have demonstrated that GEN-011 NPTs: •Are 99% T cells made up of both CD4+ and CD8+ T cells with the desired T cell phenotype (>98% central and effector memory, on average); •Highly neoantigen-specific (up to 96% neoantigen-specific, with activity against 89% of target neoantigens on average); •Powerfully cytolytic against their targets with no off-target cytotoxicity in vitro; •Polyfunctional, secreting effector, stimulatory and chemoattractive mediators; and •Highly active and potent. We are conducting the TiTAN trial, treating patients with GEN-011 as monotherapy for tumors that have not achieved an adequate response after CPI therapy. Our target indications include melanoma, non-small cell lung cancer, small cell lung cancer, squamous cell carcinoma of the head and neck, urothelial carcinoma, renal cell carcinoma, cutaneous squamous cell carcinoma, and anal squamous cell carcinoma. In the second quarter of 2021, we dosed our first patient. The TiTAN trial will contain two patient cohorts: •Cohort A patients will receive GEN-011 in a repeated lower dose regimen with no lymphodepletion and an intermediate dose of IL-2 after each GEN-011 dose; •Cohort B patients will receive GEN-011 as a single high dose with both lymphodepletion and high dose IL-2. The TiTAN trial's objectives are safety, clinical activity including overall response rate and duration of response, and GEN-011's proliferation and persistence as well as tumor T cell penetration. We expect to have initial data from a small subset of patients in the first quarter or early in the second quarter of 2022. However, patient accrual to clinical trials and subsequent dosing and trial participation are dependent upon both patient choice and health, and investigator decisions. Predictions of data availability and release of results may be affected by individual patient events among other factors. 19 --------------------------------------------------------------------------------
GEN-009
GEN-009 is a neoantigen vaccine candidate delivering adjuvanted synthetic long peptides spanning ATLAS-identified anti-tumor neoantigens. We are conducting a Phase 1/2a clinical trial for GEN-009 across a range of solid tumor types. Part A of the trial is assessing the monotherapy GEN-009 for safety, immunogenicity and ability to prevent disease relapse in certain cancer patients with no detectable tumor at the time of vaccination but with a risk of relapse. Part B of the trial is assessing the safety, immunogenicity and preliminary anti-tumor activity of GEN-009 in combination with CPI therapy in patients with advanced or metastatic tumors. We have observed the following from our data, most recently presented at theAmerican Society of Clinical Oncology Annual Meeting inJune 2021 : In Part A of the trial, we have observed the following in the eight dosed patients: •100% of patients had measurable CD4+ and/or CD8+ T cell responses to their GEN-009 vaccine; •Responses were detected against 99% of the administered vaccine neoantigens (N=88 administered antigens), a response rate in excess of that which has been reported previously by others in response to candidate neoantigen vaccines; •GEN-009 was well tolerated, with no dose-limiting toxicities observed; and •Only two of the eight vaccinated patients have developed a recurrence of their targeted tumor. In Part B of the trial, we continue to evaluate immune responses and efficacy in two cohorts of patients, those who are checkpoint-sensitive and those who are checkpoint-resistant. •In the checkpoint-sensitive cohort, we believe we have shown compelling signals of response. •Of the nine checkpoint-sensitive patients, four have independent RECIST criteria responses that appear to be attributable to GEN-009. •Of those four patients, one patient achieved a complete response and three patients achieved a partial response after vaccination. •In the checkpoint-resistant cohort, we believe that GEN-009 has shown early evidence of stabilization of disease. •This group of seven patients initially started their CPI therapy but quickly progressed and transitioned to standard-of-care therapy which generally consists of radiation and/or chemotherapy. After completing the standard-of-care therapy, these patients received GEN-009 vaccination. •Of the seven patients, one patient achieved a partial response and two achieved prolonged disease stabilization. We believe the GEN-009 data confirm the potential antigen selection advantages of ATLAS and suggest a differentiating advantage for GEN-011. Other research activities In addition to our two clinical programs, we are conducting research in several areas: •Exploring the potential for novel antigens of protective T cell responses to SARS-CoV-2, or COVID-19, to provide effectiveness against multiple virus strains; •Identifying TCRs to ATLAS-identified shared neoantigens, in collaboration with theUniversity of Minnesota ; •Exploring T cell responses to oncoviruses associated with certain cancers such as Epstein-Barr virus and human papilloma virus; •Identifying shared antigen immunotherapies encompassing shared neoantigens and non-mutated tumor-associated antigens; •Exploring Inhibigen biology; and •Further optimizing ATLAS. Since these other research activities are early stage, we cannot provide specific timelines for if, or when, these activities may result in new clinical candidates. Business update regarding COVID-19 The current COVID-19 pandemic has presented a substantial public health and economic challenge around the world and is affecting our employees, patients, communities and business operations, as well as theU.S. economy and financial markets. The full extent to which the COVID-19 pandemic will directly or indirectly affect our business, results of operations and financial condition will depend on future developments that are highly uncertain and cannot be accurately predicted, including new information that may emerge concerning COVID-19, the actions taken to contain it or treat its impact and the economic impact on local, regional, national and international markets. 20 -------------------------------------------------------------------------------- To date, we have been able to continue our operations and do not anticipate any material interruptions for the foreseeable future. However, we are continuing to assess the potential impact of the COVID-19 pandemic on our business and operations, including our expenses, supply chain and preclinical and clinical trials. Our third-party contract manufacturing partners continue to operate their manufacturing facilities at or near normal levels. While we currently do not anticipate any interruptions in our supply chain, it is possible that the COVID-19 pandemic and response efforts may have an impact in the future on us and/or our third-party suppliers and contract manufacturing partners' ability to manufacture our products or the products of our partners. Financing and business operations We commenced business operations inAugust 2006 . To date, our operations have been limited to organizing and staffing our company, acquiring and developing our proprietary ATLAS technology, identifying potential product candidates, and undertaking preclinical studies and clinical trials for our product candidates. We have not generated any product revenue and do not expect to do so for the foreseeable future. We have financed our operations primarily through the issuance of our equity securities and through debt financings. As ofSeptember 30, 2021 , we had received an aggregate of$453.5 million in net proceeds from the issuance of equity securities, we had outstanding borrowings of$10.5 million , and our cash and cash equivalents were$48.9 million . Since inception, we have incurred significant operating losses. We expect to incur significant expenses and increasing operating losses for the foreseeable future. Our net losses may fluctuate significantly from quarter-to-quarter and year-to-year. We will need to generate significant revenue to achieve profitability, and we may never do so. InJanuary 2021 , we entered into a sublease agreement for one floor of lab and office space throughJune 2022 , with an option for the sublessee to extend the sublease for an additional two months. After the initial option, which is at the sublessee's sole discretion, the sublease agreement contains additional options for us and the sublessee to mutually extend the sublease for up to an additional eighteen months. As we retained our obligations under the sublease, we are recording the payments received from the sublease as a reduction of lease expense. Sublease income of$0.4 million and$1.1 million was recorded as a reduction of lease expense during the three and nine months endedSeptember 30, 2021 , respectively. OnFebruary 18, 2021 (the "2021 Loan Closing Date"), we entered into a loan and security agreement (the "2021 Loan Agreement") withSilicon Valley Bank ("SVB") for a$10.0 million secured term loan (the "2021 Term Loan").$9.0 million of the proceeds from the 2021 Term Loan were used to repay our borrowings that were outstanding at the 2021 Loan Closing Date under our previous loan and security agreement with Hercules Capital, Inc. ("Hercules"), paying off all obligations owing under, and extinguishing, the previous loan and security agreement with Hercules on the 2021 Loan Closing Date. The remaining proceeds from the 2021 Term Loan of$1.0 million were received by us for working capital and general corporate purposes. The 2021 Term Loan is subject to a final payment charge of$0.5 million that will be amortized as a debt issuance cost over the expected term of the loan. We have an agreement withCowen and Company, LLC ("Cowen") to establish an at-the-market ("ATM") equity offering program pursuant to which Cowen is able to offer and sell up to$50.0 million of our common stock at prevailing market prices. In the nine months endedSeptember 30, 2021 , we sold approximately 4.0 million shares under our ATM and received net proceeds of$9.9 million , after deducting commissions. ThroughSeptember 30, 2021 , we have sold an aggregate of approximately 6.9 million shares under our ATM and received$19.8 million in net proceeds. As ofSeptember 30, 2021 , we had$29.7 million in gross proceeds remaining under our ATM. We have a purchase agreement withLincoln Park Capital ("LPC") pursuant to which, for a period of 30 months beginning inOctober 2019 , we have the right, at our sole discretion, to sell up to$30.0 million of our common stock to LPC based on prevailing market prices of our common stock at the time of each sale. The purchase agreement limits our sales of shares of common stock to LPC to approximately 5.2 million shares of common stock, representing 19.99% of the shares of common stock outstanding on the date of the purchase agreement. The purchase agreement also prohibits us from directing LPC to purchase any shares of common stock if those shares, when aggregated with all other shares of our common stock then beneficially owned by LPC and its affiliates, would result in LPC and its affiliates having beneficial ownership, at any single point in time, of more than 9.99% of the then total outstanding shares of our common stock. As ofSeptember 30, 2021 , we had$24.0 million remaining under our agreement with LPC. As reflected in our condensed consolidated financial statements, we used cash of$34.3 million to fund operating activities during the nine months endedSeptember 30, 2021 and had$48.9 million available in cash and cash equivalents atSeptember 30, 2021 . In addition, we had an accumulated deficit of$394.6 million and anticipate that we will continue to incur significant operating losses for the foreseeable future as we continue to develop our product candidates. Until such time, if ever, as we attempt to generate substantial product revenue and achieve profitability, we expect to finance our cash needs through a combination of equity offerings and strategic transactions, and other sources of funding. If we are unable to raise additional funds when needed, we may be required to implement cost reduction strategies, including ceasing development of GEN-011 or other corporate programs and activities, including our Inhibigens and COVID-19 programs. We expect that our available cash and cash equivalents atSeptember 30, 2021 should be sufficient to fund operations into the third quarter of 2022. 21 -------------------------------------------------------------------------------- Costs related to clinical trials can be unpredictable, and there can be no guarantee that our current balances of cash and cash equivalents, combined with proceeds received from other sources, will be sufficient to fund our trials or operations through this period. These funds will not be sufficient to enable us to conduct pivotal clinical trials for, seek marketing approval for, or commercially launch GEN-011, GEN-009 or any other product candidate. Accordingly, we will be required to obtain further funding through public or private equity offerings, collaboration and licensing arrangements, or other sources. Adequate additional financing may not be available to us on acceptable terms, or at all, which could result in a decision to pause or delay development or advancement of clinical trials for one or more of our product candidates. Similarly, we may decide to pause or delay development or advancement of clinical trials for one or more of our product candidates if we believe that such development or advancement is imprudent or impractical. Financial Overview Revenues We have not generated any revenues from product sales to date, and we do not expect to generate revenues from product sales for the foreseeable future. Our license revenue in the three and nine months endedSeptember 30, 2021 and 2020 was derived from a material transfer agreement (the "MTA") with Shionogi & Co., Ltd. ("Shionogi"). InJuly 2021 , Shionogi informed us that their studies under the MTA were successful and demonstrated that GEN-003 antigen vaccination was protective in animal models of genital herpes. However, due to a change in Shionogi's corporate focus, Shionogi allowed its option to negotiate an exclusive development and commercialization license for the HSV-2 antigens prior to the expiration of the MTA to lapse. See Note 3. Revenue within the notes to the condensed consolidated financial statements in this Quarterly Report on Form 10-Q. Research and development expenses Research and development expenses consist primarily of costs incurred to advance our preclinical and clinical candidates, which include: •payroll and other headcount-related expenses; •expenses incurred under agreements with contract research organizations, contract manufacturing organizations, consultants, and other vendors that conduct our clinical trials and preclinical activities; •costs of acquiring, developing, and manufacturing clinical trial materials and lab supplies; and •facility costs, depreciation, and other expenses, which include direct and allocated expenses for rent and maintenance of facilities, insurance, and other supplies. The following table summarizes research and development expenses for our product candidates for the three and nine months endedSeptember 30, 2021 and 2020 (in thousands): Three Months Ended September 30 Nine Months Ended September 30 2021 2020 2021 2020 Phase 1/2a programs $ 6,526$ 2,135 $ 19,777$ 10,544 Discovery and pre-IND 1,496 3,722 4,960 11,075 Other research and development 1,451 1,691 4,000 4,504 Total research and development $ 9,473$ 7,548
$ 28,737
Phase 1/2a programs are Phase 1 or Phase 2 development activities. Discovery and pre-IND includes costs incurred to support our discovery research and translational science efforts up to the initiation of Phase 1 development. Other research and development include costs that are not specifically allocated to active programs, including facility costs, depreciation expense, and other costs. General and administrative expenses General and administrative expenses consist primarily of payroll and other headcount-related expenses for executive and other administrative functions. Other general and administrative expenses include facility costs, professional fees associated with consulting, corporate and intellectual property legal expenses, and accounting services. Other income (expense) Other income (expense) consists of the change in the fair value of the warrant liability, transaction expenses, interest expense, net of interest income, gains and losses on the sale and disposal of assets, and gains and losses on foreign currency. Critical Accounting Policies and Significant Judgments and Estimates Our critical accounting policies have not changed from those described in the 2020 10-K. 22 --------------------------------------------------------------------------------
Results of Operations
Comparison of the three and nine months ended
Three Months Ended September 30 Nine Months Ended September 30 2021 2020 2021 2020 (in thousands) License revenue$ 1,641 $ 453 $ 1,641$ 1,359 License revenue increased$1.2 million in three months endedSeptember 30, 2021 , as compared to the three months endedSeptember 30, 2021 , and increased$0.3 million in the nine months endedSeptember 30, 2021 , as compared to the nine months endedSeptember 30, 2020 . The increase in both periods relates to revenue recognized in connection with the expiration of the MTA with Shionogi during the three and nine months endedSeptember 30, 2021 . Research and development expenses Three Months Ended September 30 Nine Months Ended September 30 2021 2020 2021 2020 (in thousands) Research and development $ 9,473 $
7,548 $ 28,737
Research and development expenses increased$1.9 million in the three months endedSeptember 30, 2021 , as compared to the three months endedSeptember 30, 2020 . The increase was largely due to higher manufacturing and clinical costs of$1.3 million and higher headcount and headcount-related costs of$0.7 million . Research and development expenses increased$2.6 million in the nine months endedSeptember 30, 2021 , as compared to the nine months endedSeptember 30, 2020 . The increase was largely due to higher headcount and headcount-related costs of$2.1 million and higher manufacturing and clinical costs of$0.6 million . General and administrative expenses Three Months Ended September 30 Nine Months Ended September 30 2021 2020 2021 2020 (in thousands) General and administrative $ 3,884 $
3,644 $ 11,588
General and administrative expenses increased$0.2 million in the three months endedSeptember 30, 2021 , as compared to the three months endedSeptember 30, 2020 . The increase was primarily due to higher headcount and headcount-related costs of$0.6 million , partially offset by lower facilities costs, net of sublease income, of$0.6 million . General and administrative expenses increased$1.1 million in the nine months endedSeptember 30, 2021 , as compared to the nine months endedSeptember 30, 2020 . The increase was primarily due to higher headcount and headcount-related costs of$1.9 million , increased professional services fees of$0.4 million and higher depreciation expense of$0.3 million , partially offset by lower facilities costs, net of sublease income, of$1.8 million . Change in fair value of warrants Three Months Ended September 30 Nine Months Ended September 30 2021 2020 2021 2020 (in thousands) Change in fair value of warrants $ 8,382$ 10,767 $ 19,753$ 11,770 Change in fair value of warrants reflects the non-cash change in the fair value of our liability-classified warrants, which were recorded at their fair value on the date of issuance and are remeasured at the end of each reporting period. The fair value of our warrant liabilities is determined using a Monte Carlo simulation. See Note 9. Warrants for the assumptions and methodologies used in calculating the estimated fair value. At the expiration of the down-round protection feature onJuly 25, 2021 , the 2020 Warrants were remeasured to their fair value and subsequently reclassified to equity. The increase in both the three and nine months endedSeptember 30, 2021 , as compared to the three and nine months endedSeptember 30, 2020 , was primarily due to theJuly 2020 issuance of liability-classified warrants for 33.6 million shares of our common stock in connection with our 2020 private placement. 23 --------------------------------------------------------------------------------
Interest expense, net
Three Months Ended September 30 Nine Months Ended September 30 2021 2020 2021 2020 (in thousands) Interest expense, net $ (290)$ (377) $ (851)$ (1,001) Interest expense, net, consists primarily of interest expense on our long-term debt facilities, partially offset by interest earned on our cash equivalents. Other income (expense) Three Months Ended September 30 Nine Months Ended September 30 2021 2020 2021 2020 (in thousands) Other income (expense) $ 2$ (4,206) $ (134)$ (4,223) Other expense during the nine months endedSeptember 30, 2021 consists primarily of debt prepayment and extinguishment costs. Other expense during the three and nine months endedSeptember 30, 2020 consists primarily of transaction costs incurred in connection with our 2020 private placement. Liquidity and Capital Resources Overview Since our inception in 2006, we have funded operations primarily through proceeds from issuances of common stock and long-term debt. As ofSeptember 30, 2021 , we had$48.9 million in cash and cash equivalents. InApril 2018 , we entered into an amended and restated loan and security agreement, which was subsequently amended inNovember 2019 (as amended, the "Hercules Loan Agreement"), with Hercules. The Hercules Loan Agreement provided a$14.0 million secured term loan that was scheduled to mature onMay 1, 2021 and that accrued interest at a floating rate per annum equal to the greater of (i) 8.00%, or (ii) the sum of 3.00% plus the prime rate. We were also obligated to pay a final payment charge of$1.0 million at maturity. On the 2021 Loan Closing Date, we entered into the 2021 Loan Agreement with SVB for the$10.0 million 2021 Term Loan.$9.0 million of the proceeds from the 2021 Term Loan were used to repay our borrowings that were outstanding at the 2021 Loan Closing Date under the Hercules Loan Agreement, paying off all obligations owing under, and extinguishing, the Hercules Loan Agreement, on the 2021 Loan Closing Date. The remaining proceeds from the 2021 Term Loan of$1.0 million were received by us for working capital and general corporate purposes. The 2021 Term Loan is subject to a final payment charge of$0.5 million that will be amortized as a debt issuance cost over the expected term of the loan. The 2021 Loan Agreement contains customary covenants and representations, including a financial reporting covenant and limitations on dividends, indebtedness, collateral, investments, distributions, transfers, mergers or acquisitions, taxes, corporate changes, deposit accounts, and subsidiaries. There are no financial covenants. As ofSeptember 30, 2021 , we were in compliance with all covenants under the 2021 Loan Agreement. The 2021 Loan Agreement also includes customary events of default, including payment defaults, breaches of covenants, change of control and occurrence of a material adverse effect. Amounts outstanding during an event of default shall be payable on demand and shall accrue interest at an additional rate of 4.0% per annum of the past due amount outstanding. We have determined that the risk of subjective acceleration under the material adverse effects clause was remote and therefore has classified the long-term portion of the outstanding principal in non-current liabilities. We have not generated any revenues from product sales to date, and we do not expect to generate revenues from product sales for the foreseeable future. We have an agreement with Cowen to establish an ATM equity offering program pursuant to which Cowen is able to offer and sell up to$50.0 million of our common stock at prevailing market prices. In the nine months endedSeptember 30, 2021 , we sold approximately 4.0 million shares under our ATM and received net proceeds of$9.9 million , after deducting commissions. Cumulatively throughSeptember 30, 2021 , we have sold an aggregate of approximately 6.9 million shares under the ATM and received$19.8 million in net proceeds. As ofSeptember 30, 2021 , we had$29.7 million in gross proceeds remaining under the ATM. 24 -------------------------------------------------------------------------------- We have a purchase agreement with LPC pursuant to which, for a period of 30 months beginning inOctober 2019 , we have the right, at our sole discretion, to sell up to$30.0 million of our common stock to LPC based on prevailing market prices of our common stock at the time of each sale. The purchase agreement limits our sales of shares of common stock to LPC to approximately 5.2 million shares of common stock, representing 19.99% of the shares of common stock outstanding on the date of the purchase agreement. The purchase agreement also prohibits us from directing LPC to purchase any shares of common stock if those shares, when aggregated with all other shares of our common stock then beneficially owned by LPC and its affiliates, would result in LPC and its affiliates having beneficial ownership, at any single point in time, of more than 9.99% of the then total outstanding shares of our common stock. As ofSeptember 30, 2021 , we had$24.0 million remaining under our agreement with LPC. Cash flows from operating activities Cash flows from operating activities consist of our net loss adjusted for various non-cash items, changes in working capital and changes in certain other balance sheet accounts. Cash used in operating activities for the nine months endedSeptember 30, 2021 and 2020 was$34.3 million and$32.0 million , respectively. Cash used in operating activities for the nine months endedSeptember 30, 2021 increased by$2.3 million when compared to the nine months endedSeptember 30, 2020 . This increase was primarily due to increased research and development expenses for GEN-011 and growth of our corporate infrastructure. Cash flows from investing activities Investing activities used$2.3 million and$1.2 million of cash in nine months endedSeptember 30, 2021 and 2020, respectively. Cash used by investing activities was primarily for purchases of property and equipment in both of the nine months endedSeptember 30, 2021 and 2020. Cash flows from financing activities Financing activities provided$5.7 million and$80.7 million of cash in the nine months endedSeptember 30, 2021 and 2020, respectively. In the nine months endedSeptember 30, 2021 , we repaid$14.0 million in long-term debt and paid deferred financing charges of$0.3 million , partially offset by the issuance of long-term debt for proceeds of$10.0 million and the issuance of shares of our common stock under our ATM for net proceeds of$9.9 million . In the nine months endedSeptember 30, 2020 , the 2020 private placement generated net proceeds of$74.5 million , we issued shares of common stock to LPC for net proceeds of$3.5 million , and we issued shares of common stock under our ATM for net proceeds of$2.7 million . Operating capital requirements Our primary uses of capital are for headcount-related costs, manufacturing costs for preclinical and clinical materials, third-party clinical trial services, laboratory and related supplies, legal and other regulatory expenses, facilities and general overhead costs. We expect these costs will continue to be the primary operating capital requirements for the near future. We expect that our cash and cash equivalents as ofSeptember 30, 2021 of$48.9 million should be sufficient to fund operations into the third quarter of 2022. These funds may not be sufficient to fund operations for at least the next twelve months from the date of issuance of these condensed consolidated financial statements which raises substantial doubt about our ability to continue as a going concern. Our future viability beyond one year from the date of issuance of the condensed consolidated financial statements is dependent on our ability to raise additional capital to finance its operations. If we are unable to raise additional funds when needed, we may be required to implement cost reduction strategies, including ceasing development of GEN-011 or other research programs and activities, including our Inhibigens and COVID-19 programs. We expect to finance our cash needs through a combination of equity offerings, strategic transactions, or other sources of funding, including utilization of our purchase agreement with LPC and our ATM equity offering program with Cowen. We expect that our operating plan, which includes these funding sources, extends operations to the end of 2022. Although we plan to pursue additional funding, there is no assurance that we will be successful in obtaining sufficient funding on terms acceptable to us to fund continuing operations, or at all. We have based our projections of operating capital requirements on assumptions that may prove to be incorrect, and we may use all of our available capital resources sooner than we expect. Because of the numerous risks and uncertainties associated with research, development and commercialization of pharmaceutical products coupled with the global economic uncertainty that has arisen with the outbreak of COVID-19, we are unable to estimate the exact amount of our operating capital requirements. Our future funding requirements will depend on many factors, including, but not limited to: •the timing and costs of our planned clinical trials for GEN- 011; •the progress, timing, and costs of manufacturing GEN-011; •the timing of GEN-011 patient enrollment and dosing; •the availability of GEN-011 third-party manufacturing capacity; •the availability and timing of additional financing; •the initiation, progress, timing, costs, and results of preclinical studies and clinical trials for our potential product candidates; 25 -------------------------------------------------------------------------------- •the terms and timing of any future collaborations, grants, licensing, consulting, or other arrangements that we may establish; •the amount and timing of any payments we may be required to make, or that we may receive, in connection with the licensing, filing, prosecution, defense and enforcement of any patents or other intellectual property rights, including milestone payments, royalty payments and patent prosecution fees that we are obligated to pay pursuant to our license agreements; •the costs of preparing, filing, and prosecuting patent applications, maintaining and protecting our intellectual property rights, and defending against intellectual property related claims; •the extent to which we in-license or acquire other products and technologies; •the costs to manufacture material for clinical trials; •the costs to seek regulatory approvals for any product candidates that successfully complete clinical trials; •the costs to attract and retain skilled personnel; and •the costs to create additional infrastructure to support our operations as a public company and our product development and planned future commercialization efforts. We will need to obtain substantial additional funding in order to complete clinical trials and receive regulatory approval for GEN-011, GEN-009 and our other product candidates. To the extent that we raise additional capital through the sale of our common stock, convertible securities, or other equity securities, the ownership interests of our existing stockholders may be materially diluted, and the terms of these securities could include liquidation or other preferences that could adversely affect the rights of our existing stockholders. If we are unable to raise capital when needed or on attractive terms, we could be forced to significantly delay, scale back, or discontinue the development of GEN-011, GEN-009 or our other product candidates, seek collaborators at an earlier stage than otherwise would be desirable or on terms that are less favorable than might otherwise be available, and relinquish or license, potentially on unfavorable terms, our rights to GEN-011, GEN-009 or our other product candidates that we otherwise would seek to develop or commercialize ourselves. Item 3. Quantitative and Qualitative Disclosures about Market Risk We had cash and cash equivalents of$48.9 million as ofSeptember 30, 2021 . The primary objectives of our investment activities are to preserve principal, provide liquidity and maximize income without significantly increasing risk. Our primary exposure to market risk relates to fluctuations in interest rates, which are affected by changes in the general level ofU.S. interest rates. Given the short-term nature of our cash and cash equivalents, we believe that a sudden change in market interest rates would not be expected to have a material impact on our financial condition and/or results of operations. We do not own any derivative financial instruments. We do not believe that our cash and cash equivalents have significant risk of default or illiquidity. While we believe our cash and cash equivalents do not contain excessive risk, we cannot provide absolute assurance that in the future our investments will not be subject to adverse changes in market value. In addition, we maintain significant amounts of cash and cash equivalents at one or more financial institutions that are in excess of federally insured limits. We currently do not have significant exposure to foreign currencies as we hold no foreign exchange contracts, option contracts, or other foreign hedging arrangements. Further, our operations are primarily denominated inU.S. dollars. Our operations may be subject to fluctuations in foreign currency exchange rates in the future. Inflation generally affects us by increasing our cost of labor and clinical trial costs. We do not believe that inflation had a material effect on our results of operations during the nine months endedSeptember 30, 2021 . Item 4. Controls and Procedures Evaluation of Disclosure Controls and Procedures We maintain disclosure controls and procedures that are designed to ensure that information required to be disclosed in the reports that we file or submit under the Securities and Exchange Act of 1934, as amended (the "Exchange Act"), is (1) recorded, processed, summarized, and reported within the time periods specified in theSEC's rules and forms, and (2) accumulated and communicated to our management, including our principal executive officer and principal financial officer, to allow timely decisions regarding required disclosure. Our management, with the participation of our principal executive officer and principal financial officer, evaluated the effectiveness of our disclosure controls and procedures as ofSeptember 30, 2021 (as defined in Rules 13a-15(e) and 15d-15(e) under the Exchange Act). Our management recognizes that any controls and procedures, no matter how well designed and operated, can provide only reasonable assurance of achieving their objectives, and management necessarily applies its judgment in evaluating the cost-benefit relationship of possible controls and procedures. Our principal executive officer and principal financial officer have concluded based upon the evaluation described above that, as ofSeptember 30, 2021 , our disclosure controls and procedures were effective at the reasonable assurance level. 26 -------------------------------------------------------------------------------- Changes in Internal Control Over Financial Reporting During the three months endedSeptember 30, 2021 , there have been no changes in our internal control over financial reporting, as such term is defined in Rules 13a-15(f) and 15(d)-15(f) promulgated under the Exchange Act, that have materially affected, or are reasonably likely to materially affect, our internal control over financial reporting. 27
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