Forward-Looking Information





The following discussion of our financial condition and results of operations
should be read in conjunction with the unaudited condensed consolidated and
combined financial statements and the corresponding notes included in this
Quarterly Report on Form 10-Q, as well as the audited consolidated and combined
financial statements and notes thereto included in our Annual Report on Form
10-K. This discussion contains forward-looking statements that involve
significant risks and uncertainties. As a result of many factors, such as those
referenced or set forth under "Cautionary Note Regarding Forward-Looking
Statements" and "Risk Factors" in Item 1A of this Quarterly Report on Form 10-Q,
our actual results may differ materially from those anticipated in these
forward-looking statements.



Overview



We are a clinical-stage biopharmaceutical company harnessing the power of
soluble guanylate cyclase, or sGC, pharmacology to discover, develop and
commercialize breakthrough treatments for serious and orphan diseases. Our focus
is enabling the full therapeutic potential of next-generation sGC stimulators.
Our strategy rests on a solid scientific foundation that is enabled by our
people and capabilities, external collaborations and a responsive capital
allocation approach.



We operate in one reportable business segment-human therapeutics.

Separation from Ironwood Pharmaceuticals


On April 1, 2019, Ironwood Pharmaceuticals Inc., or Ironwood, completed the
separation of its sGC business, and certain other assets and liabilities, into
us as a separate, independent publicly traded company by way of a pro-rata
distribution of our common stock through a dividend distribution of one share of
our common stock, with no par value per share, for every 10 shares of Ironwood
common stock held by Ironwood stockholders as of the close of business on
March 19, 2019, the record date for the distribution, which we refer to herein
as the Separation. As a result of the Separation, we became an independent
public company and commenced trading under the symbol "CYCN" on the Nasdaq
Global Select Market on April 2, 2019.



In connection with the Separation, on March 30, 2019, we entered into certain agreements with Ironwood to provide a framework for our relationship with Ironwood following the Separation, including, among others, a Separation Agreement, a Tax Matters Agreement, and an Employee Matters Agreement.





In addition, in connection with the Separation, on April 1, 2019, we entered
into a Development Agreement, an Ironwood Transition Services Agreement (which
has been terminated), a Cyclerion Transition Services Agreement and an
Intellectual Property License Agreement with Ironwood.



On April 2, 2019, we issued 11,817,165 shares of our common stock, in the Private Placement to accredited investors for gross proceeds of $175 million (net proceeds of approximately $165 million).


Our historical condensed consolidated and combined financial statements for the
periods prior to the Separation have been derived from Ironwood's combined
financial statements and accounting records and are presented in conformity with
United States Generally Accepted Accounting Principles, or U.S. GAAP.



Our historical financial statements may not be indicative of our future
performance and do not necessarily reflect what our results of operations,
financial condition and cash flows would have been had we operated as a
separate, publicly traded company for the periods presented prior to the
Separation. The condensed consolidated and combined financial statements prior
to the Separation included herein do not reflect any changes that occurred in
our financing or operations as a result of the Separation from Ironwood.



  22






Financial Overview



Research and Development Expense. Research and development expenses are incurred
in connection with the discovery and development of our product candidates.
These expenses consist primarily of the following costs: compensation, benefits
and other employee-related expenses, research and development related
facilities, third-party contracts relating to nonclinical study and clinical
trial activities. All research and development expenses are charged to
operations as incurred.



The core of our research and development strategy is to harness the power of sGC
pharmacology to develop therapies for serious and orphan diseases. Our portfolio
of programs includes:



Olinciguat is a once-daily, orally administered vascular sGC stimulator that is
well suited for the potential treatment of sickle cell disease, or SCD. We are
conducting a randomized, placebo-controlled, dose-ranging Phase 2 study,
STRONG-SCD, that has closed enrollment with 70 participants enrolled from both
US and ex-US sites. This study is designed to explore a broad range of tolerated
doses and optimize our understanding of the therapeutic potential of olinciguat
in SCD. We expect topline data from this study in Q3 2020.



In June 2018, the U.S. Food and Drug Administration, or the FDA, granted Orphan
Drug Designation to olinciguat for the treatment of patients with SCD. Orphan
Drug Designation provides marketing exclusivity for seven years from the date of
the product's approval for marketing and contributes to a significant reduction
in development costs.



Praliciguat is an orally administered, once-daily systemic sGC stimulator that
was evaluated in two recently completed Phase 2 proof-of-concept studies: a
dose-ranging study in 156 adult patients with diabetic nephropathy, and a study
in 196 adult patients with heart failure with preserved ejection fraction
(HfpEF), CAPACITY-HfpEF. On October 30, 2019, we released topline results from
these studies.



In CAPACITY-HfpEF, the study did not meet statistical significance on its
primary endpoint of improved exercise capacity from baseline as compared to
placebo, measured by cardiopulmonary exercise testing. There was clear evidence
of drug exposure and pharmacological activity as judged by expected reductions
in blood pressure. Praliciguat was generally well tolerated. We are
discontinuing development of praliciguat in HfpEF.



The study of praliciguat in participants with diabetic nephropathy also did not
meet statistical significance on its primary endpoint of reduction in
albuminuria from baseline as compared to placebo, measured by urine albumin
creatinine ratio. However, there was a trend toward improvement across the total
intention-to-treat study population. Praliciguat was generally well tolerated.
As previously announced, discussions continue on the out-licensing of
praliciguat for late-stage global development and commercialization.



IW-6463 is an orally administered central nervous system-penetrant sGC
stimulator that, because it readily crosses the blood-brain barrier, affords an
unprecedented opportunity to expand the utility of sGC pharmacology to serious
neurodegenerative diseases. On January 13, 2020 we released positive top line
results from our first-in-human study of IW-6463. IW-6463 was generally well
tolerated in healthy human adults. The study demonstrated IW-6463 penetration
across the blood-brain-barrier at levels expected to be pharmacologically active
as well as a mild reduction in blood pressure providing evidence of peripheral
pharmacological activity. The Company intends to continue development activities
for IW-6463. In December 2019 we initiated an ongoing translational pharmacology
study in elderly subjects. Topline data from this study is expected in mid-2020.



Discovery Research. Our orally administered liver-targeted sGC stimulator is
designed to selectively partition to the liver. By achieving liver
concentrations many fold higher than corresponding plasma concentrations, we
intend to maximize hepatic pharmacology. In animal models of liver fibrosis
treated with systemic sGC stimulators, we have observed reductions in liver
fibrosis, inflammation and steatosis, pathophysiological processes that underlie
multiple chronic liver diseases.



Our lung-targeted sGC stimulator will be administered via inhalation and will be
aimed at realizing the full potential of sGC stimulation in pulmonary diseases
by selectively increasing exposure in the lung. By achieving significantly
greater selectivity for lung over plasma, we intend to maximize pulmonary
pharmacology.



  23





Additional discovery efforts are ongoing and aimed at further expanding the potential of sGC stimulation in disorders of the central nervous system, or CNS.





The following table summarizes our research and development expenses related to
our product pipeline, as well as employee and facility related costs allocated
to research and development expense, for the three months ended March 31, 2020
and 2019. These product pipeline expenses relate primarily to external costs
associated with nonclinical studies and clinical trial costs, which are
presented by development candidates.



                                             Three Months Ended March 31,
                                               2020                 2019
                                                    (in thousands)
Product pipeline external costs:
Olinciguat                                         2,626       $        3,971
Praliciguat                               $          135                5,738
IW-6463                                            1,338                  461
Discovery research                                    13                  534
Total product pipeline external costs              4,112               

10,704


Personnel and related internal costs               7,737                

9,758


Facilities and other                               4,976                

5,942

Total research and development expenses $ 16,825 $ 26,404






Securing regulatory approvals for new drugs is a lengthy and costly process. Any
failure by us to obtain, or any delay in obtaining, regulatory approvals would
materially adversely affect our product development efforts and our business
overall.



Given the inherent uncertainties of pharmaceutical product development, we
cannot estimate with any degree of certainty how our programs will evolve, and
therefore the amount of time or money that would be required to obtain
regulatory approval to market them. As a result of these uncertainties
surrounding the timing and outcome of any approvals, we are currently unable to
estimate precisely when, if ever, our discovery and development candidates will
be approved. We invest carefully in our pipeline, and the commitment of funding
for each subsequent stage of our development programs is dependent upon the
receipt of clear, supportive data.



The successful development of our product candidates is highly uncertain and subject to a number of risks including, but not limited to:

· The COVID-19 pandemic could affect our programs and operations in ways that are

difficult to precisely judge at this time, including its operations, clinical

trials, corporate development discussions and other activities. Cyclerion is

working closely with its clinical trial sites and investigators to deliver its

ongoing and planned trials in a manner consistent with the safety of study


   participants and healthcare professionals.



· The duration of clinical trials may vary substantially according to the type

and complexity of the product candidate and may take longer than expected.

· The FDA and comparable agencies in foreign countries impose substantial and

varying requirements on the introduction of therapeutic pharmaceutical

products, which typically require lengthy and detailed laboratory and clinical

testing procedures, sampling activities and other costly and time-consuming


   procedures.



· Data obtained from nonclinical and clinical activities at any step in the

testing process may be adverse and lead to discontinuation or redirection of

development activity. Data obtained from these activities also are susceptible

to varying interpretations, which could delay, limit or prevent regulatory


   approval.




  24





· The duration and cost of discovery, nonclinical studies and clinical trials may

vary significantly over the life of a product candidate and are difficult to


   predict.



· The costs, timing and outcome of regulatory review of a product candidate may

not be favorable, and, even if approved, a product may face post-approval


   development and regulatory requirements.



· The emergence of competing technologies and products and other adverse market


   developments may negatively impact us.




As a result of the factors listed in the "Risk Factors" section in Item 1A of
our annual report on Form 10-K for the fiscal year ended December 31, 2019, and
elsewhere in this Quarterly Report on Form 10-Q, we are unable to determine the
duration and costs to complete current or future nonclinical and clinical stages
of our product candidates or when, or to what extent, we will generate revenues
from the commercialization and sale of our product candidates. Development
timelines, probability of success and development costs vary widely. We
anticipate that we will make determinations as to which additional programs to
pursue and how much funding to direct to each program on an ongoing basis in
response to the data from the studies of each product candidate, the competitive
landscape and ongoing assessments of such product candidate's commercial
potential.



General and Administrative Expense. General and administrative expense consists
primarily of compensation, benefits and other employee-related expenses for
personnel in our administrative, finance, legal, information technology,
business development, communications and human resource functions. Other costs
include the legal costs of pursuing patent protection of our intellectual
property, general and administrative related facility costs, insurance costs and
professional fees for accounting and legal services. Certain costs associated
with our Separation from Ironwood are included in these expenses. We record all
general and administrative expenses as incurred.



Critical Accounting Policies and Estimates





Our discussion and analysis of our financial condition and results of operations
is based upon our condensed consolidated and combined financial statements
prepared in accordance with U.S. GAAP. The preparation of these financial
statements requires us to make certain estimates and assumptions that may affect
the reported amounts of assets and liabilities and disclosure of contingent
assets and liabilities at the date of the condensed consolidated and combined
financial statements, and the amounts of expenses during the reported periods.
Significant estimates and assumptions in our condensed consolidated and combined
financial statements include those related to allocation of expenses, assets and
liabilities from Ironwood's historical financial statements for the periods
prior to the Separation, impairment of long-lived assets; income taxes,
including the valuation allowance for deferred tax assets; research and
development expenses; contingencies and share-based compensation. We base our
estimates on our historical experience and on various other assumptions that are
believed to be reasonable, the results of which form the basis for making
judgments about the carrying values of assets and liabilities. Actual results
may differ materially from our estimates under different assumptions or
conditions. Changes in estimates are reflected in reported results in the period
in which they become known.



We believe that our application of accounting policies requires significant
judgments and estimates on the part of management and is the most critical to
aid in fully understanding and evaluating our reported financial results. Our
significant accounting policies are more fully described in Note 2, Summary of
Significant Accounting Policies, of the condensed consolidated and combined
financial statements elsewhere in this Quarterly Report on Form 10-Q.



All research and development expenses are expensed as incurred. We defer and
capitalize nonrefundable advance payments we make for research and development
activities until the related goods are received or the related services are
performed. See Note 2, Summary of Significant Accounting Policies, of the
condensed consolidated and combined financial statements appearing elsewhere in
this Quarterly Report on Form 10-Q.



  25






Results of Operations



For the period prior to the Separation, our condensed consolidated and combined
financial statements include an allocation of expenses related to certain
Ironwood corporate functions, including senior management, legal, human
resources, finance, information technology and quality assurance. These expenses
were allocated to Cyclerion based on direct usage or benefit where identifiable,
with the remainder allocated pro-rata based on project related costs, headcount
or other measures. We considered the allocation methodologies used to be a
reasonable and appropriate reflection of the historical Ironwood expenses
attributable to us. The expenses reflected in the condensed consolidated and
combined financial statements may not be indicative of expenses that will be
incurred by us in the future. After the Separation, we began performing these
corporate functions using internal resources or purchased services, certain of
which were provided by Ironwood under the Transition Services Agreement. The
following discussion summarizes the key factors we believed are necessary for an
understanding of our consolidated financial statements.



                                Three Months Ended March 31,               Change
                                  2020                 2019              $           %
                                               (dollars in thousands)
Revenue from related party   $        1,014       $            -     $   1,014         -
Cost and expenses:
Research and development             16,825               26,404        (9,579 )     (36 )%
General and administrative            6,891               10,977        (4,086 )     (37 )%
Gain on lease modification           (2,113 )                  -        (2,113 )     100 %
Total cost and expenses              21,603               37,381       (15,778 )     (42 )%
Loss from operations                (20,589 )            (37,381 )      16,792       (45 )%

Interest and other income               361                    -          

361       100 %
Net loss                     $      (20,228 )     $      (37,381 )   $  17,153       (46 )%




Revenue from related party. The increase in revenue from related party for the
three months ended March 31, 2020 compared to the three months ended March 31,
2019 is the result of services performed under the Development Agreement for
Ironwood, which was entered into in connection with the Separation.



Research and development expense.  The decrease in research and development
expense of approximately $9.6 million for the three months ended March 31, 2020
compared to the three months ended March 31, 2019 was primarily related to a
decrease of approximately $2.0 million in employee-related expenses as compared
to the allocation of such costs by Ironwood in the prior period, a decrease of
approximately $1.0 million in facilities and operating costs allocated to
research and development, and a net decrease of approximately $6.6 million in
external research costs. The net decrease in external research costs was
primarily due to decreases over the periods of approximately $5.6 million
associated with the completion of two praliciguat phase 2 proof-of-concept
studies, both of which reported top line data on October 30, 2019, $1.3 million
associated with olinciguat due to the completion of supporting ancillary
studies, and $0.5 million in discovery research. These decreases were partially
offset by an increase over the periods of approximately $0.9 million associated
with IW-6463 studies.



General and administrative expense.  The decrease in general and administrative
expenses of approximately $4.1 million for the three months ended March 31, 2020
compared to the three months ended March 31, 2019 was primarily driven by
approximately $3.5 million of non-recurring outsourced professional services and
other costs associated with the Separation recorded in the prior period and a
decrease of approximately $0.6 million of salaries, bonus and other
employee-related costs as compared to the pre-Separation allocation from
Ironwood recorded in the prior period.



Gain on lease modification. The gain on lease modification of $2.1 million recorded in the three months ended March 31, 2020 is related to the Lease Amendment to our Master Lease at 301 Binney Street in Cambridge, Massachusetts that was executed on February 28, 2020.





  26






Interest and other income.  Interest and other income increased by approximately
$0.4 million for the three months ended March 31, 2020 compared to the three
months ended March 31, 2019 due to the recognition of $0.2 million of interest
generated on excess operating funds from investments in U.S. government money
market funds in the current period and the recognition of approximately $0.1
million of net sublease income in the current period. There was no interest or
sublease income recognized for the three months ended March 31, 2019 because
there was no cash allocated to Cyclerion and no lease directly attributed to
Cyclerion prior to the Separation.



Liquidity and Capital Resources





Prior to the Separation, the primary source of liquidity for our business was
cash flow allocated to Cyclerion from Ironwood. Post Separation, transfers of
cash to and from Ironwood related to the Transition Service Agreements,
Development Agreement and provisions of the Separation Agreement, have been
reflected in the condensed consolidated and combined statement of cash flows.



After giving effect to the completion of the Separation on April 1, 2019, we
raised approximately $165 million net of direct financing expenses with the
closing of the Private Placement on April 2, 2019. Subsequent to the Separation,
we no longer participate in Ironwood's centralized cash management or receive
direct funding from Ironwood.



On March 31, 2020, we had approximately $67.1 million of unrestricted cash and
cash equivalents. Our cash equivalents include amounts held in U.S. government
money market funds. We invest cash in excess of immediate requirements in
accordance with our investment policy, which requires all investments held by us
to be at least "AAA" rated or equivalent, with a remaining final maturity when
purchased of less than twelve months, so as to primarily achieve liquidity

and
capital preservation.



Our ability to fund our operations and capital needs will depend on our ongoing
ability to generate cash from operations and access to capital markets and other
sources of capital, as further described below. We anticipate that our principal
uses of cash in the future will be primarily to fund our operations, working
capital needs, capital expenditures and other general corporate purposes.



Going Concern



Based on our development plans and clinical stage patient testing and our timing
expectations related to the progress of our discovery research programs, we
expect that our existing cash and cash equivalents as of March 31, 2020, will be
sufficient to fund our planned operating expenses and capital expenditure
requirements into the second quarter of 2021, excluding net cash flows from
potential business development activities. We have based this estimate on
assumptions that may prove to be wrong, particularly as the process of testing
drug candidates in clinical trials is costly and the timing of progress in

these
trials is uncertain.



Cash Flows



The following is a summary of cash flows for the years ended March 31, 2020 and
2019:



                                         Three Months Ended March 31,                  Change
                                           2020                 2019              $              %
                                                           (dollars in thousands)
Net cash used in operating
activities                            $      (29,180 )     $      (34,271 )   $    5,091            (15 )%
Net cash used in investing
activities                            $       (1,356 )     $       (1,814 )   $      458            (25 )%
Net cash provided by financing
activities                            $            1       $       36,085     $  (36,084 )         (100 )%






  27





Cash Flows from Operating Activities





Net cash used in operating activities was $29.2 million for the three months
ended March 31, 2020 compared to $34.3 million for the three months ended March
31, 2019. The decrease in net cash used in operations of $5.1 million primarily
relates to a decrease of $17.2 million in our net loss, partially offset by the
payment of a $6.3 million termination fee related to the master lease
modification in the current year, an increase in working capital accounts of
$3.8 million and the recording of a non-cash gain on lease modification of
$2.1
million in the current year.


Cash Flows from Investing Activities


Net cash used in investing activities was $1.4 million for the three months
ended March 31, 2020 compared to $1.8 million for the three months ended March
31, 2019. The decrease in net cash used in investing activities was primarily
from a decrease in purchases of property and equipment, primarily leasehold
improvements.



Cash Flows from Financing Activities





Cash provided by financing activities was de minimis for the three months ended
March 31, 2020. Cash provided by financing activities for the three months ended
March 31, 2019 was approximately $36.1 million, resulting from the cash
transferred to us from Ironwood based on changes in our cash used for operations
prior to the Separation.



Funding Requirements



We expect our expenses to fluctuate as we advance the preclinical activities and
clinical trials of our product candidates. Our expenses will also fluctuate

as
we:


· continue advancing our product candidates into preclinical and clinical


   development;



· seek regulatory approvals for any product candidates that successfully complete


   clinical trials;



· may potentially hire additional clinical, quality control and scientific


   personnel;



· enhance our operational, financial and management systems; and

· maintain, expand and protect our intellectual property portfolio.

We believe that our existing cash and cash equivalents as of March 31, 2020 will enable us to fund our planned operating expenses and capital expenditure requirements into the second quarter of 2021 excluding net cash flows from potential business development activities. We have based this estimate on assumptions that may prove to be wrong, and we could exhaust our available capital resources sooner than we expect.

Because of the many risks and uncertainties associated with research, development and commercialization of product candidates, we are unable to estimate the exact amount of our working capital requirements. Our future funding requirements will depend on, and could increase or decrease significantly as a result of, many factors, including the:

· scope, progress, results and costs of researching and developing our product


   candidates, and conducting preclinical studies and clinical trials;



· costs, timing and outcome of regulatory review of our product candidates;

· costs of future activities, including medical affairs, manufacturing and

distribution, for any of our product candidates for which we receive marketing


   approval;




· cost and timing of necessary actions to support our strategic objectives;

· costs of preparing, filing and prosecuting patent applications, maintaining and


   enforcing our intellectual property rights and defending intellectual
   property-related claims; and



· timing, receipt and amount of sales of, or milestone payments related to or

royalties on, our current or future product candidates, if any.








  28






A change in any of these or other variables with respect to the development of
any of our product candidates could significantly change the costs and timing of
the development of that product candidate. Further, our operating plans may
change in the future, and we may need additional funds to meet operational needs
and capital requirements associated with such operating plans.



Until such time, if ever, as we can generate substantial product revenue, we
expect to finance our cash needs through a combination of public or private
equity offerings, debt financings, collaborations, strategic alliances or
licensing arrangements with third parties. As discussed under the "Risk Factors"
in Item 1A of our Annual Report on Form 10-K for the fiscal year ended December
31, 2019, to preserve the tax-free treatment of the Separation, we may be
barred, in certain circumstances, for a two year period following the
Separation, from engaging in certain capital raising transactions. To the extent
that we raise additional capital through the sale of equity or convertible debt
securities, outstanding equity ownership may be materially diluted, and the
terms of securities sold in such transactions could include liquidation or other
preferences that adversely affect the rights of holders of common stock. Debt
financing and preferred equity financing, if available, may involve agreements
that include restrictive covenants that limit our ability to take specified
actions, such as incurring additional debt, making capital expenditures or
declaring dividends. In addition, debt financing would result in increased

fixed
payment obligations.


If we raise funds through collaborations, strategic alliances or licensing arrangements with third parties, we may have to relinquish valuable rights to our technologies, future revenue streams, research programs or product candidates or grant licenses on terms that may not be favorable to us.


If we are unable to raise additional funds when needed, we may be required to
delay, reduce or eliminate our product development or future commercialization
efforts, or grant rights to develop and market product candidates that we would
otherwise prefer to develop and market ourselves.



Contractual Commitments and Obligations





Tax-related Obligations


We exclude assets, liabilities or obligations pertaining to uncertain tax positions from our summary of contractual commitments and obligations as we cannot make a reliable estimate of the period of cash settlement with the respective taxing authorities. As of March 31, 2020, we had no uncertain tax positions.





Other Funding Commitments



As of March 31, 2020, we had, and continue to have, several ongoing studies in
various clinical trial stages. Our most significant clinical trial spending is
with clinical research organizations, or CROs. The contracts with CROs generally
are cancellable, with notice, at our option and do not have any significant
cancellation penalties.



Transition from Ironwood and Costs to Operate as an Independent Company


Our condensed consolidated and combined financial statements for the period
prior to the Separation reflect our operating results and financial position as
it was operated by Ironwood, rather than as an independent company. As a result
of the Separation, we have incurred additional ongoing operating expenses to
operate as an independent, publicly traded, company. These costs include the
cost of various corporate headquarters functions, incremental information
technology-related costs and incremental costs to operate stand-alone
accounting, legal, human resources and other administrative functions. We also
incur non-recurring expenses and non-recurring capital expenditures.



  29






We entered into the Ironwood Transition Services Agreement that provided us with
certain services and resources related to corporate functions for an initial
term of up to two years from the date of the Separation (as applicable). All
services provided by Ironwood to the Company under the Ironwood Transition
Services Agreement were completed as of March 31, 2020, and it has been
terminated.



It is not practicable to estimate the costs that would have been incurred in
each of the periods presented in the historical financial statements for the
functions described above. Actual costs that would have been incurred if we
operated as a stand-alone company for the periods prior to the Separation would
have depended on various factors, including organizational design, outsourcing
and other strategic decisions related to corporate functions, information
technology and back office infrastructure.



Off-Balance Sheet Arrangements


We do not have any relationships with unconsolidated entities or financial
partnerships, such as entities often referred to as structured finance or
special purpose entities, that would have been established for the purpose of
facilitating off-balance sheet arrangements (as that term is defined in
Item 303(a)(4)(ii) of Regulation S-K) or other contractually narrow or limited
purposes. As such, we are not exposed to any financing, liquidity, market or
credit risk that could arise if we had engaged in those types of relationships.
We enter into guarantees in the ordinary course of business related to the
guarantee of our own performance.



New Accounting Pronouncements


For a discussion of new accounting pronouncements see Note 2, Summary of Significant Accounting Policies, of the condensed consolidated and combined financial statements appearing elsewhere in this Quarterly Report on Form 10-Q.

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