Special Note Regarding Forward-Looking Statements
This Quarterly Report on Form 10-Q contains forward-looking statements within
the meaning of the Private Securities Litigation Reform Act of 1995 concerning
our business, operations and financial performance and condition, as well as our
plans, objectives and expectations for our business, operations and financial
performance and condition. Any statements contained herein that are not
statements of historical facts may be deemed to be forward-looking statements.
In some cases, you can identify forward-looking statements by terminology such
as "aim," "anticipate," "assume," "believe," "contemplate," "continue," "could,"
"due," "estimate," "expect," "goal," "intend," "may," "objective," "plan,"
"predict," "potential," "positioned," "seek," "should," "target," "will,"
"would" and other similar expressions that are predictions of or indicate future
events and future trends, or the negative of these terms or other comparable
terminology, although not all forward-looking statements contain these words.
These forward-looking statements include, but are not limited to, statements
about:

•estimates of our addressable market, market growth, future revenue, key
performance indicators, expenses, capital requirements and our needs for
additional financing;
•the implementation of our business model and strategic plans for our products,
workflows and technologies;
•our ability to successfully implement alternative non-direct purchase channels,
including subscription and partnership offerings and the design of any such
alternatives;
•our expectations regarding the rate and degree of market acceptance of our
platform;
•our ability to manage our supply chain;
•competitive companies and technologies and our industry;
•our ability to manage and grow our business by expanding our sales to existing
customers or introducing our products and workflows to new customers;
•our continuing efforts to improve the quality and increase the reliability of
our advanced automation systems;
•our ability to develop and commercialize new products and workflows;
•our ability to perform in our existing joint development and partnership
agreements and engage in new arrangements;
•our ability to establish and maintain intellectual property protection for our
products and workflows or avoid or defend claims of infringement, including with
respect to our intellectual property litigation with AbCellera and The
University of British Columbia;
•the performance of third party manufacturers and suppliers and the availability
of materials, parts and components therefrom;
•the potential effects of government regulation;
•the potential effects of governmental and agency directives and guidance
related to COVID-19;
•our ability to hire and retain key personnel and to manage our future growth
effectively;
•our ability to obtain additional financing in future offerings;
•the volatility of the trading price of our common stock;
•our ability to attract and retain key scientific and engineering personnel;
•our expectations regarding the period during which we qualify as an emerging
growth company under the JOBS Act;
•our expectations regarding the use of proceeds from our initial public offering
in July 2020; and
•our expectations about market trends.

Forward-looking statements are based on management's current expectations, estimates, forecasts and projections about our business and the industry in which we operate, and management's beliefs and assumptions are not


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guarantees of future performance or development and involve known and unknown
risks, uncertainties and other factors that are in some cases beyond our
control. As a result, any or all of our forward-looking statements in this
Quarterly Report on Form 10-Q may turn out to be inaccurate. Furthermore, if the
forward-looking statements prove to be inaccurate, the inaccuracy may be
material. In light of the significant uncertainties in these forward-looking
statements, you should not regard these statements as a representation or
warranty by us or any other person that we will achieve our objectives and plans
in any specified time frame, or at all.
In addition, statements that "we believe" and similar statements reflect our
beliefs and opinions on the relevant subject. These statements are based upon
information available to us as of the date of this Quarterly Report on Form
10-Q, and while we believe such information forms a reasonable basis for such
statements, such information may be limited or incomplete, and our statements
should not be read to indicate that we have conducted an exhaustive inquiry
into, or review of, all potentially available relevant information. These
statements are inherently uncertain and investors are cautioned not to unduly
rely upon these statements.
You should read the following discussion of our financial condition and results
of operations in conjunction with our unaudited condensed financial statements
and the related notes and other financial information included elsewhere in this
Quarterly Report on Form 10-Q and our audited consolidated financial statements
and notes thereto and management's discussion and analysis of financial
condition and results of operations for the fiscal year ended December 31, 2020
included in Annual Report on Form 10-K and filed with the Securities and
Exchange Commission on March 12, 2021. Our actual results could differ
materially from those anticipated in these forward-looking statements as a
result of various factors, including those discussed in Item 1A. "Risk Factors"
of our Annual Report on Form 10-K for the year ended December 31, 2020, or
elsewhere in this Quarterly Report on Form 10-Q, and our other reports filed
with the SEC.
Overview
Berkeley Lights is a leading Digital Cell Biology company focused on enabling
and accelerating the rapid development and commercialization of biotherapeutics
and other cell-based products. The Berkeley Lights Platform captures deep
phenotypic, functional and genotypic information for thousands of single cells
in parallel and can also deliver the live biology customers desire in the form
of the best cells. This is a new way to capture and interpret the qualitative
language of biology and translate it into single-cell specific digital
information, referred to as Digital Cell Biology. We currently focus on enabling
the large and rapidly growing markets of antibody therapeutics, cell therapy and
synthetic biology with our platform.
The Berkeley Lights Platform can be used to characterize the performance of
cells relevant to the desired cell-based product early in the discovery process
and then connect this phenotypic data to the genetic code for each cell. In
contrast, current genomic technologies find sequences first and fail to deliver
the functional information early in the process. Performing functional
validation early means letting poorly performing cells fail early while rapidly
advancing the best candidates forward, before incurring significant research and
development expense. Our platform repeats this process of fail and advance many
times throughout the process, delivering the best cells for what we, or our
customers believe will deliver the best product.
Our platform is a fully integrated, end-to-end solution, comprised of
proprietary consumables, including our OptoSelect chips and reagent kits,
advanced automation systems and advanced application and workflow software.
Customers load onto our system their live cell samples, as well as media and
reagents, then the cells are imported onto our OptoSelect chips where integrated
workflows are performed to assess specific cell functions and attributes. Our
platform captures and delivers rich single-cell data to find the best cells. Our
platform leverages proprietary OptoElectro Positioning ("OEP") technology, which
enables deterministic positioning of living single cells and other micro-objects
using light. OEP is a core technology of our platform and allows for a high
level of control over live single cells or other micro-objects throughout the
functional characterization process.
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Our commercial workflows, each of which are distinct offerings, are made up of
four modules we call Import, Culture, Assay and Export. These modules can be
adapted, interchanged and deployed with a variety of single-cell assays to
address specific applications and a variety of cell types. We believe this
versatility facilitates rapid development of new workflow offerings and
expansive workflow commercialization opportunities. We have developed and will
continue to develop and commercialize proprietary workflows across large markets
by leveraging existing workflows and assays. Over time, our goal is to enable
customers to standardize many of their processes on our platform utilizing our
workflows. We believe we are the only company commercializing a platform that
can do this in a scalable way. From the initial launch of our platform in 2016
through September 30, 2021, we have commercially launched ten workflows.
Our customer base is comprised of companies from the pharmaceutical industry,
biotechnology companies, agriculture companies and government and academia
institutions who leverage our platforms and workflows across established
industry markets, including antibody therapeutics, cell therapy, gene therapy,
including viral vector manufacturing, agricultural biology and synthetic
biology.
Historically, we have financed our operations primarily from the issuance and
sale of convertible preferred stock, borrowings under our long-term debt
agreement, as well as cash flows from operations. On July 21, 2020, we closed
our initial public offering (the "IPO"), in which we sold 9,315,000 shares of
common stock (which included 1,215,000 shares that were sold pursuant to the
full exercise of the IPO underwriters' option to purchase additional shares) at
a price to the public of $22.00 per share. We received aggregate net proceeds of
$187.9 million after deducting offering costs, underwriting discounts and
commissions of $17.0 million.
Since our inception in 2011, we have incurred net losses in each year. Our net
losses were $20.4 million and $8.6 million for the three months ended September
30, 2021 and 2020, respectively, and $54.0 and $29.5 million for the nine months
ended September 30, 2021 and 2020, respectively. As of September 30, 2021, we
had an accumulated deficit of $245.9 million and cash and cash equivalents
totaling $197.0 million. We expect to continue to incur significant expenses and
operating losses for the foreseeable future.
Certain of our financial results and other key operational developments for the
three and nine months ended September 30, 2021 include the following:
•Total revenue for the three months ended September 30, 2021 was $24.3 million
compared to $18.2 million for the same period in 2020. Total revenue for the
nine months ended September 30, 2021 was $62.2 million compared to $42.6 million
for the same period in 2020.
•Gross profit for the three and nine months ended September 30, 2021 increased
to $15.4 million and $40.6 million, respectively from $12.8 million and $29.7
million, respectively, for the three and nine months ended September 30, 2020.

COVID-19 Update



The COVID-19 pandemic continues to present business challenges in 2021. We have
initiated a plan to reintroduce more employees into the workplace as vaccine
rates increase and the number of positive COVID-19 cases continue to decrease.
Although a certain number of our general and administrative employees continue
to work partly, or primarily, from home, as do many of our sales and marketing
employees, and we have not returned to pre-pandemic operations, we are starting
to experience stabilization of our employee on-site attendance. During the nine
months ended September 30, 2021, our production, shipping and customer service
functions have remained operational to maintain a continuous supply of products
both to our customers and for our internal research and development activities.
We are communicating regularly with our suppliers so that our supply chain
remains intact. We are closely monitoring global supply issues around materials,
parts and
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components, including plastics and integrated circuit chips, and we have not
experienced any material supply issues to date. We continue to monitor US and
applicable State government and agency directives and guidelines, including
those issued by the State of California's Division of Occupational Safety and
Health, better known as Cal/OSHA.
Although we believe the COVID-19 pandemic did not have a significant impact on
our financial results in the nine months ended September 30, 2021, the ultimate
impact of COVID-19 on our operations and financial performance in future periods
remains uncertain and will depend on future pandemic related developments.
COVID-19 pandemic developments that may impact our business include, the
duration of the pandemic, any potential subsequent waves of COVID-19 infection,
the effectiveness, distribution and acceptance of COVID-19 vaccines and
therapies, and related government actions to prevent and manage disease spread,
all of which are uncertain and cannot be predicted.
Components of results of operations
Revenue
Our revenue consists of both product and service revenue, which is generated
through the following revenue streams: (i) direct platform sales (advanced
automation systems, fully-paid workflow license agreements and platform
support), (ii) recurring revenue (annual workflow license agreements, workflow
subscription agreements, consumables, service and extended or enhanced warranty
contracts), and revenues under our Tech Access subscription model, and (iii)
revenue from partnerships related to our joint development agreements, and to a
lesser extent feasibility studies. Sales of advanced automation systems,
recurring revenue from consumables, workflow subscription agreements, and
workflow licenses are defined as product revenue; and revenue from joint
development agreements and partnerships, service and extended or enhanced
warranty contracts, feasibility studies and platform support are defined as
service revenue in our consolidated results of operations. We launched our Tech
Access subscription model in June 2021.
Direct platform sales: Direct platform sales are comprised of our customers,
distributors and dealers directly purchasing our advanced automation systems,
which include the Beacon and Lightning systems and Culture Station instrument.
Direct platform sales can also include fixed-term sales-type lease arrangements
with certain qualified customers. These direct purchases included, during our
early customer engagements, a fully-paid workflow license to practice the
desired workflow(s) in a specific field of use. In addition, we also offer
platform support to the extent customers require further system and workflow
optimization following platform implementation. Direct platform sales were as
follows for the periods presented:
                            Three months ended September 30,         Three month change          Nine months ended September 30,          Nine month change
(in thousands, except
percentages)                     2021                 2020            Amount        %                 2021                2020             Amount        %
Direct platform sales      $          14,128       $   12,394       $     1,734     14  %       $         36,633       $   29,361       $      7,272     25  %
Total revenue              $          24,324       $   18,208       $     6,116     34  %       $         62,202       $   42,555       $     19,647     46  %
Direct platform sales as %
of total revenue                       58  %           68  %                                               59  %           69  %



Recurring revenue: Each platform placement, depending on the chosen access
model, drives various streams of recurring revenue. With each workflow, our
customers require certain consumables such as our OptoSelect chips and reagent
kits to run their workflows. The OptoSelect chips can only be used with our
platform and we believe there are no alternative after-market options that can
be used as a substitute. Each OptoSelect chip is considered, and labeled for,
single-use and only used for one workflow. Consumables are sold without the
right of return and
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revenue is recognized upon transfer of control. We also offer our customers
extended warranty and service programs for regular system maintenance and system
optimization. These services are provided primarily on a fixed fee basis. We
recognize revenue from the sale of an extended warranty contract over the
respective coverage period. Extended and enhanced warranty, as well as service
contracts, are typically short-term in nature, generally covering a one-year
period.

Recurring revenue may also include annually renewable workflow licenses as well as quarterly workflow subscription revenue from annual or multi-year subscription agreements.

Recurring revenue was as follows for the periods presented:


                            Three months ended September 30,         Three month change          Nine months ended September 30,          Nine month change
(in thousands, except
percentages)                      2021                2020            Amount        %                 2021                2020             Amount        %
Recurring revenue           $          4,733       $    3,671       $     1,062     29  %       $         13,073       $    9,072       $      4,001     44  %
Total revenue               $         24,324       $   18,208       $     6,116     34  %       $         62,202       $   42,555       $     19,647     46  %
Recurring revenue as % of
total revenue                          19  %            20  %                                              21  %            21  %



Revenue from joint development agreements and partnerships: Joint development
agreements and partnerships, including collaboration agreements, are
arrangements whereby we provide services for the development of new workflows,
cell, or organism types, or deliver specific biological assets to meet specific
customers' needs. Such contracts can be executed on a time-and-materials basis
or include defined milestones associated with these development activities over
extended periods of time, some in excess of twenty-four months. Our joint
development agreements that include formal milestones may include formal
customer acceptance clauses as each milestone is completed as well as an
approval to proceed with the next milestone. Some development agreements may
also include a prerequisite feasibility study to determine proof of concept
before any work is initiated. We generally recognize revenue over time using an
input measure of progress based on costs incurred to date as compared to the
total estimated costs (i.e. percentage of completion), or in certain instances
on a time-and-materials basis, depending on the terms of the development
agreement. We periodically review and update our estimates which may adjust
revenue recognized for the period. Revenue from joint development and
partnership agreements can vary over time as different projects start, progress,
and complete. On occasion, we also perform feasibility studies prior to a direct
platform sale in the event customers require specific platform validation prior
to purchase.

Joint development agreement and partnership related revenue was as follows for the periods presented:


                            Three months ended September 30,         Three month change          Nine months ended September 30,          Nine month change
(in thousands, except
percentages)                      2021                2020            Amount        %                 2021                2020             Amount        %
Joint development agreement
and partnership revenue     $          5,463       $    2,143       $     3,320    155  %       $         12,496       $    4,122       $      8,374    203  %
Total revenue               $         24,324       $   18,208       $     6,116     34  %       $         62,202       $   42,555       $     19,647     46  %
Joint development agreement
and partnership revenue as
% of total revenue                     23  %            12  %                                              20  %            10  %


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Costs of sales, gross profit and gross margin
Product cost of sales. Cost of sales associated with our products primarily
consists of manufacturing related costs incurred in the production process,
including personnel and related costs, costs of component materials, labor and
overhead, packaging and delivery costs and allocated costs, including facilities
and information technology. These costs also include the costs associated with
the standard assurance-type product warranty provided on our platforms, which
are recorded at the time of sale.
Service cost of sales. Cost of sales associated with our services primarily
consists of personnel and related costs, expenses related to the development of
customized platforms and workflows, feasibility studies on our platforms and
service and warranty costs to support our customers. We maintain continuous
efforts to increase reliability of our advanced automation systems.

Gross profit and gross margin. Gross profit is calculated as revenue less cost
of sales. Gross margin is gross profit expressed as a percentage of revenue. Our
gross profit in future periods will depend on a variety of factors, including:
market conditions that may impact our pricing; sales mix among platform access
options, including the regional mix of sales; sales mix changes among
consumables, advanced automation systems and services; product mix changes
between established products and new products; excess and obsolete inventories;
our cost structure for manufacturing operations relative to volume; and product
warranty obligations. We expect cost of sales to increase in absolute dollars in
future periods as our revenue grows, and as we plan to hire additional employees
to support our manufacturing, operations, service and support organizations.
Operating expenses
Research and development. Research and development costs primarily consist of
salaries, benefits, incentive compensation, stock-based compensation, laboratory
supplies, materials expenses and allocated facilities and IT costs for employees
and contractors engaged in research and product development. We expense all
research and development costs in the period in which they are incurred.
We plan to continue to invest in our research and development efforts, including
hiring additional employees, to enhance existing products and develop new
products. As a result, we expect that our research and development expenses will
continue to increase in absolute dollars in future periods. We expect these
expenses to vary from period to period as a percentage of revenue.

General and administrative. Our general and administrative expenses primarily
consist of salaries, benefits and stock-based compensation costs for employees
in our executive, accounting and finance, legal and human resource functions, as
well as professional services fees, such as consulting, audit, tax and legal
fees, general corporate costs and allocated overhead expenses. We expect that
our general and administrative expenses will continue to increase in absolute
dollars, primarily due to increased headcount to support anticipated growth in
the business and due to incremental costs associated with operating as a public
company. We expect these expenses to vary from period to period as a percentage
of revenue.

Sales and marketing. Our sales and marketing expenses consist primarily of
salaries, benefits, sales commissions and stock-based compensation costs for
employees within our commercial sales functions, as well as marketing, travel
expenses and allocated facilities and IT costs. We expect our sales and
marketing expenses to increase in absolute dollars as we expand our commercial
sales, marketing and business development teams, increase our presence globally
and increase marketing activities to drive awareness and adoption of our
platform. While these expenses may vary from period to period as a percentage of
revenue, we expect these expenses to increase as a percent of sales in the
short-term as we continue to grow our commercial organization to support
anticipated growth in the business.
We expect our aggregate stock-based compensation to continue to increase in
absolute dollar terms.
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Other income (expense)
Interest expense. Interest expense consists primarily of interest related to
borrowings under our debt obligations.
Interest income. Interest income primarily consists of interest earned on our
cash and cash equivalents which are invested in cash deposits and in money
market funds.
Other income (expense), net. Other income (expense), net consists primarily of
foreign currency exchange gains and losses. Foreign currency exchange gains and
losses relate to transactions and asset and liability balances denominated in
currencies other than the U.S. dollar, primarily related to our operations in
the United Kingdom. We expect our foreign currency gains and losses to continue
to fluctuate in the future due to changes in foreign currency exchange rates.
Provision for income taxes
Our provision for income taxes consists primarily of foreign taxes and state
minimum taxes in the United States. As we expand the scale and scope of our
international business activities, any changes in the United States and foreign
taxation of such activities may increase our overall provision for income taxes
in the future.
Results of operations
The following tables set forth our results of operations for the periods
presented:
                                            Three months ended September 30,       Nine months ended September 30,
(in thousands)                                  2021                2020               2021                2020
Revenue:
Product revenue                             $   16,704          $  14,103          $   43,258          $  33,893
Service revenue                                  7,620              4,105              18,944              8,662
Total revenue                                   24,324             18,208              62,202             42,555
Cost of sales:
Product cost of sales                            4,797              3,463              11,832              8,467
Service cost of sales                            4,114              1,937               9,778              4,339
Total cost of sales (1)                          8,911              5,400              21,610             12,806
Gross profit                                    15,413             12,808              40,592             29,749
Operating expenses:
Research and development (1)                    16,195             10,421              42,757             33,240
General and administrative (1)                  12,258              7,229              32,950             15,419
Sales and marketing (1)                          6,940              3,341              17,863              9,651
Total operating expenses                        35,393             20,991              93,570             58,310
Loss from operations                           (19,980)            (8,183)            (52,978)           (28,561)
Other income (expense):
Interest expense                                  (232)              (361)               (942)            (1,074)
Interest income                                     33                 51                 142                249
Other income (expense), net                       (170)                10                (117)                72
Loss before income taxes                       (20,349)            (8,483)            (53,895)           (29,314)
Provision for income taxes                          54                118                  97                142

Net loss and net comprehensive loss $ (20,403) $ (8,601)

       $  (53,992)         $ (29,456)



                                       29

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(1)Amounts include stock-based compensation as follows:


                                           Three months ended September 30,         Nine months ended September 30,
(in thousands)                                  2021                2020                2021                2020
Cost of sales                              $        85          $     116          $       190          $     176
Research and development                         1,508                820                4,168              1,884
General and administrative                       2,562              1,406                6,431              2,521
Sales and marketing                              1,807                193                5,296                485

Total stock-based compensation expense $ 5,962 $ 2,535

$ 16,085 $ 5,066





Comparison of the three and nine months ended September 30, 2021 and 2020
Revenue
                             Three months ended September                                     Nine months ended September
                                         30,                      Three month change                      30,                       Nine month change
(in thousands, except
percentages)                    2021              2020              Amount       %               2021              2020              Amount        %
Product revenue             $  16,704          $ 14,103          $   2,601       18  %       $  43,258          $ 33,893          $   9,365        28  %
Service revenue                 7,620             4,105              3,515       86  %          18,944             8,662          $  10,282       119  %
Total revenue               $  24,324          $ 18,208          $   6,116       34  %       $  62,202          $ 42,555          $  19,647        46  %



Product revenue increased by $2.6 million, or 18%, for the three months ended
September 30, 2021, compared to the three months ended September 30, 2020. The
increase was primarily driven by strong demand across our markets, especially
from the Antibody Therapeutics market resulting in an increase of $2.0 million
from platform and system sales, including sales-type lease arrangements and
license arrangements related to our workflows, and service revenue, an increase
of $0.4 million in consumables sales driven by additional demand from our
customers due to the increase in our installed base, and an increase of $0.2
million in subscription arrangement and related revenue. During the three months
ended September 30, 2021, we placed thirteen platforms, inclusive of three
TechAccess subscriptions booked and announced in the second quarter of 2021.
During the three months ended September 30, 2020 we placed in total eight
platforms.
Service revenue increased by $3.5 million, or 86%, for the three months ended
September 30, 2021, compared to the three months ended September 30, 2020. The
increase was primarily driven by higher revenue associated with joint
development agreement and partnership revenue of $3.3 million from significant
new contracts signed during 2021, as well as an increase from sales in service
warranty and application support arrangements of $0.2 million.
Product revenue increased by $9.4 million, or 28%, for the nine months ended
September 30, 2021, compared to the nine months ended September 30, 2020. The
increase was primarily driven by higher revenue in all markets. Revenue from
platform and system sales increased by $6.8 million, including sales-type lease
arrangements and license arrangements related to our workflows and revenue from
the sale of consumables increased by $1.7 million driven by additional demand
due to the increase in our installed base. Revenue from subscription
arrangements increased by $0.9 million for the nine months ended September 30,
2021 compared to the same period in 2020. During the nine months ended
September 30, 2021 we placed thirty platforms. During the nine months ended
September 30, 2020 we placed eighteen platforms.
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Service revenue increased by $10.3 million, or 119 % for the nine months ended
September 30, 2021, compared to the nine months ended September 30, 2020. The
increase was primarily driven by increased revenue associated with joint
development and partnership revenue of $8.4 million, as well as an increase from
sales in service warranty and application support arrangements of $1.9 million.
Cost of sales, gross profit and gross margin
                          Three months ended September
                                       30,                       Three month change         Nine months ended September 30,         Nine month change
(in thousands, except
percentages)                 2021               2020              Amount        %               2021               2020              Amount        %
Product cost of sales    $   4,797           $  3,463          $   1,334        39  %       $  11,832           $  8,467          $   3,365        40  %
Service cost of sales        4,114              1,937              2,177       112  %           9,778              4,339              5,439       125  %
Total cost of sales      $   8,911           $  5,400          $   3,511        65  %       $  21,610           $ 12,806          $   8,804        69  %
Gross profit             $  15,413           $ 12,808          $   2,605        20  %       $  40,592           $ 29,749          $  10,843        36  %
Gross margin                    63  %              70  %                                           65  %              70  %


Product cost of sales increased by $1.3 million, or 39% and $3.4 million or 40%
for the three and nine months ended September 30, 2021, respectively, compared
to the three and nine months ended September 30, 2020 and was in line with
product revenue growth.
Service cost of sales increased by $2.2 million, or 112% and $5.4 million or
125% for the three and nine months ended September 30, 2021, respectively,
compared to the three and nine months ended September 30, 2020. The increase was
primarily due to costs incurred for joint development agreements, as well as
increased costs for extended warranty services as a result of the nature and
timing of work performed under such arrangements.
Gross profit increased by $2.6 million, or 20%, for the three months ended
September 30, 2021 and increased by $10.8 million, or 36 % for the nine months
ended September 30, 2021, respectively, compared.to the same periods in 2020.
The increase in gross profit for the three and nine months ended September 30,
2021 was primarily driven by higher revenues. Gross margin was 63% and 70% for
the three months ended September 30, 2021 and 2020, respectively and was 65% and
70% for the nine months ended September 30, 2021 and 2020, respectively.
Gross margin for the three and nine months ended September 30, 2021, was
negatively impacted by the buy-down of two workflow programs in prior periods
that are being developed in collaboration with Ginkgo Bioworks to use the
workflows in relation to certain joint development and partnership agreements.
While this buy-down does not impact our costs incurred, it reduces revenue and
gross margin related to these specific programs upon execution on a go-forward
basis.
Operating Expenses
Research and development
                             Three months ended September
                                         30,                       Three month change           Nine months ended September 30,              Nine month change
(in thousands, except
percentages)                    2021              2020              Amount        %                2021                 2020                Amount           %
Research and development    $  16,195          $ 10,421          $   5,774        55  %       $        42,757       $      33,240       $         9,517        29 %


Research and development expense increased by $5.8 million, or 55%, for the three months ended September 30, 2021, compared to the three months ended September 30, 2020. The increase was primarily due to an increase in personnel-related expenses, including a $0.7 million increase in stock-based compensation expense primarily due


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to increased headcount as a result of our continued growth and also partially
due to an increase in other costs, including testing and qualification materials
and costs related to various projects to develop and improve systems, workflows,
consumables and assays.
Research and development expense increased by $9.5 million, or 29 %, for the
nine months ended September 30, 2021, compared to the nine months ended
September 30, 2020. The increase was due to an increase in personnel-related
expenses, including a $2.3 million increase in stock-based compensation expense
resulting primarily from increased headcount, and also due to an increase in
other costs, including testing and qualification materials and other costs
related to various projects to develop and improve systems, workflows and
assays.
General and administrative
                              Three months ended September
                                          30,                       Three month change           Nine months ended September 30,              Nine month change
(in thousands, except
percentages)                     2021               2020             Amount        %                2021                 2020                Amount           %

General and administrative $ 12,258 $ 7,229 $ 5,029


       70  %       $        32,950       $      15,419       $        17,531        114 %



General and administrative expense increased by $5.0 million, or 70%, for the
three months ended September 30, 2021, compared to the three months ended
September 30, 2020. The increase was primarily due to an increase in outside
legal fees, including patent litigation support, as well as an increase in
personnel-related expenses, including a $1.2 million increase in stock-based
compensation expense primarily due to the growth of our operations, and
increased costs to improve our information processes and systems and implement
the financial reporting, compliance and other infrastructure required for a
public company.

General and administrative expense increased by $17.5 million, or 114%, for the
nine months ended September 30, 2021, compared to the nine months ended
September 30, 2020. The increase was primarily due to an increase in outside
legal fees, including patent litigation support, as well as an increase in
personnel-related expenses, including a $3.9 million increase in stock-based
compensation expense primarily due to the growth of our operations, and
increased costs to improve our information processes and systems and implement
the financial reporting, compliance and other infrastructure required for a
public company.
Sales and marketing
                            Three months ended September
                                         30,                      Three month change           Nine months ended September 30,              Nine month change
(in thousands, except
percentages)                    2021              2020             Amount        %                2021                 2020                Amount           %
Sales and marketing         $   6,940          $ 3,341          $   3,599
    108  %       $        17,863       $       9,651       $         8,212        85 %



Sales and marketing expense increased by $3.6 million, or 108%, for the three
months ended September 30, 2021, compared to the three months ended
September 30, 2020. The increase was primarily due to an increase in
personnel-related expenses, including a $1.6 million increase in stock-based
compensation expense as a result of increased headcount and certain performance
awards granted to a non-employee strategic advisor, and also due to an increase
in marketing, advertising and other costs.
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Sales and marketing expense increased by $8.2 million, or 85 %, for the nine
months ended September 30, 2021, compared to the nine months ended September 30,
2020. The increase was primarily due to an increase in personnel-related
expenses, including a $4.8 million increase in stock-based compensation and also
due to an increase in marketing, advertising and other costs.
Interest expense
                                Three months ended                                         Nine months ended September
                                   September 30,                Three month change                     30,                      Nine month change
(in thousands, except
percentages)                    2021             2020           Amount        %               2021              2020            Amount        %
Interest expense            $     232          $ 361          $   (129)      (36  %)       $    942          $ 1,074          $   (132)      (12  %)


Interest expense decreased by $0.1 million for the three and nine months ended
September 30, 2021, respectively, compared to the three and nine months ended
September 30, 2020, as a result of refinancing our loan from East West Bank,
which now carries a lower interest rate.
Interest income
                                Three months ended                                         Nine months ended September
                                   September 30,                Three month change                     30,                     Nine month change
(in thousands, except
percentages)                    2021             2020           Amount        %                2021             2020           Amount        %
Interest income             $      33          $  51          $    (18)      (35  %)       $     142          $ 249          $   (107)      (43  %)


Interest income was flat for the three months ended September 30, 2021, and
decreased $0.1 million for the nine months ended September 30, 2021, compared to
the three and nine months ended September 30, 2020. The decrease in the nine
months ended September 30, 2021 compared to the nine months ended September 30,
2020 was primarily due to lower interest received on our cash and short-term
deposits due to a decline in interest rates.
Other income (expense), net
                            Three months ended September                                    Nine months ended September
                                        30,                      Three month change                     30,                     Nine month change
(in thousands, except
percentages)                    2021             2020            Amount        %                2021             2020           Amount        %

Other income (expense), net $ (170) $ 10 $ (180)

1800 % $ (117) $ 72 $ (189) 263 %




Other income for the three and nine months ended September 30, 2021 and 2020 was
mainly comprised of foreign exchange gains and losses and other miscellaneous
income and expense items.
Liquidity and capital resources
As of September 30, 2021, we had approximately $197.0 million in cash and cash
equivalents which were primarily held in U.S. short-term bank deposit accounts
and money market funds. Restricted cash of $0.3 million serves as collateral for
our corporate credit card program. We have generated negative cumulative cash
flows from operations since inception through September 30, 2021.
We expect to incur additional operating losses in the foreseeable future as we
continue to invest in the research and development of our product offerings,
commercialize and launch platforms, and expand into new markets. Our future
capital requirements will depend on many factors including our revenue growth
rate, research and
                                       33
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development efforts, the impacts of the COVID-19 pandemic, the timing and extent
of additional capital expenditures to invest in existing and new facilities as
well as our manufacturing operations, the expansion of sales and marketing and
the introduction of new products. We have and may in the future enter into
arrangements to acquire or invest in businesses, services and technologies, and
any such acquisitions or investments could significantly increase our capital
needs.
We currently anticipate making aggregate capital expenditures between
approximately $12.0 million and $15.0 million during the next 12 months, which
is expected to primarily include equipment to be used for manufacturing and
research and development, as well as spend associated with the expansion of our
facilities to support the growth of our operations.
Based on our current business plan, we believe our existing cash and cash
equivalents and anticipated cash flows from operations will be sufficient to
meet our working capital and capital expenditure needs over at least the next 12
months.
Sources of liquidity
Since our inception, we have financed our operations primarily from the issuance
and sale of equity securities, borrowings under long-term debt agreements, and
to a lesser extent, cash flow from operations. In July 2020, we completed our
IPO, resulting in the receipt of aggregate proceeds of $187.9 million, net of
offering costs, underwriter discounts and commissions of $17.0 million.
East West Bank Loan and Security Agreement
On June 30, 2021, we entered into an Amended and Restated Loan and Security
Agreement (the "EWB Loan Agreement") with East West Bank ("EWB") providing us
with a $20.0 million term loan ("the Term Loan") which has been used to
refinance the term loan outstanding under that certain Loan and Security
Agreement with EWB dated May 23, 2018. The Term Loan matures in 48 months and
bears interest at a fixed rate of 4.17%. The Term Loan has an initial
interest-only period of 24 months, which can be extended to up to 36 months
based on the achievement of certain liquidity measures, and can be pre-paid
without penalty at any time. The EWB Loan Agreement grants EWB a security
interest in and liens on all assets of the Company, excluding intellectual
property, which is subject to a double negative pledge. In addition, certain
other terms of the original EWB agreements as previously in effect were amended
by the EWB Loan Agreement, including certain financial covenants.
We were in compliance with all covenants under the EWB Loan Agreement as of
September 30, 2021
Furthermore, the Amended and Restated Loan and Security Agreement with East West
Bank provides us with a new $10.0 million revolving credit (the "Revolving
Line"), which bears interest on the outstanding daily balance thereof of 0.70%
above the Prime Rate (as defined in the Agreement). No amounts were outstanding
under the Revolving Line as of September 30, 2021.

Cash flows
The following table summarizes our cash flows for the periods presented:
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                                                                     Nine months ended September 30,
(in thousands)                                                          2021                   2020
Net cash (used in) provided by:
Operating activities                                             $        (38,710)         $  (32,993)
Investing activities                                                      (10,715)             (1,821)
Financing activities                                                       13,018             191,014

Net decrease in cash and cash equivalents and restricted cash $ (36,407) $ 156,200







Operating activities

Net cash used in operating activities of $38.7 million for the nine months ended
September 30, 2021 was attributable to a net loss of $54.0 million and cash
outflows from changes in our net operating assets and liabilities, partially
offset by non-cash charges, primarily related to stock-based compensation and
depreciation and amortization. Cash outflow from our net operating assets and
liabilities was primarily due to an increase in inventories resulting from an
increase in raw materials and finished goods to support revenue growth and
anticipated demand, an increase in accounts receivable due to an increase in
revenue and the timing of invoicing, partially offset by an increase in deferred
revenue and accounts payable due to the timing of advanced billings and revenue
recognition as well as the timing of vendor invoicing and related payments.

Net cash used in operating activities of $33.0 million for the nine months ended
September 30, 2020 was attributable to a net loss of $29.5 million and cash
outflows from changes in our net operating assets and liabilities, partially
offset by non-cash charges, primarily related to stock-based compensation and
depreciation and amortization. Cash outflow from our net operating assets and
liabilities was primarily due to an increase in inventories due an increase in
raw materials and finished goods to support revenue growth and anticipated
demand and from an increase in prepaid expenses and deferred revenue as a result
of timing of invoicing.

Investing activities

Net cash used in investing activities was $10.7 million in the nine months ended
September 30, 2021 compared to $1.8 million in the nine months ended
September 30, 2020. The increase was primarily driven by the timing of capital
expenditures. Capital expenditures for the first nine months of 2021 include the
expansion of our research and development and Biofoundry laboratory operations
to support current and planned programs.
Financing activities
Net cash provided by financing activities was $13.0 million for the nine months
ended September 30, 2021 compared to $191.0 million for the nine months ended
September 30, 2020. Net cash provided by financing activities during the nine
months ended September 30, 2021 related to proceeds received from the issuance
of common stock upon the exercise of stock options as well as proceeds received
related to the issuance of common stock under our employee stock purchase plan.
Net cash provided by financing activities for the nine months ended
September 30, 2020 related to net cash proceeds of $187.9 million from our
initial public offering and proceeds received from the issuance of common stock
upon the exercise of stock options.
Concentration of credit risk
Most of the Company's customers are located in the United States and Asia
Pacific. For the three months ended September 30, 2021, four customers accounted
for 16%, 15%, 10% and 10% of revenue. For the nine months ended September 30,
2021, three customers accounted for 21%, 15% and 10% of revenue. For the three
months
                                       35
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ended September 30, 2020, five customers accounted for 12%, 11%, 11%, 11% and
10% of revenue. For the nine months ended September 30, 2020, one customer
accounted for 10% of revenue.
As of September 30, 2021, four customers comprised 17%, 15%, 12% and 10% of
accounts receivable.
Contractual obligations and commitments
There have been no material changes to our contractual obligations as of
September 30, 2021, as compared to those disclosed in the Annual Report on Form
10-K for the year ended December 31, 2020, with the following exceptions.
We purchase raw materials for inventory, services and equipment from a variety
of vendors, including our contract manufacturers that manufacture our
instruments and certain providers of our components for our consumable
manufacturing. Total purchase obligations that are enforceable and legally
binding on us and that specify all significant terms were $39.7 million as of
September 30, 2021, of which $21.0 million are expected to be become due after
December 31, 2021 and beyond.
During the nine months ended September 30, 2021, we entered into certain new
leases, including the seven year lease agreement for additional space for
research and development and Biofoundry operations in Lexington, Massachusetts
and extensions of existing leases. Details of our future lease obligations as of
September 30, 2021 can be found in Note 8.
Off-balance sheet arrangements
We did not have any during the periods presented, and we do not currently have,
any off-balance sheet financing arrangements or any relationships with
unconsolidated entities or financial partnerships, including entities sometimes
referred to as structured finance or special purpose entities, that were
established for the purpose of facilitating off-balance sheet arrangements or
other contractually narrow or limited purposes.
Critical accounting policies and estimates
We have prepared our condensed consolidated financial statements in accordance
with United States generally accepted accounting principles ("U.S. GAAP"). Our
preparation of these condensed consolidated financial statements requires us to
make estimates, assumptions and judgments that affect the reported amounts of
assets, liabilities, revenue, expenses and related disclosures. We evaluate our
estimates, assumptions and judgments on an ongoing basis. We base our estimates
on historical experience and on various other factors that we believe are
reasonable under the circumstances, the results of which form the basis for
making judgments about the carrying value of assets and liabilities that are not
readily apparent from other sources. Actual results could therefore differ
materially from these estimates under different assumptions or conditions.
There have been no significant changes in our critical accounting policies and
estimates as compared to the critical accounting policies and estimates
disclosed in the section titled "Management's Discussion and Analysis of
Financial Condition and Operations" included in our Annual Report on Form 10-K
for the year ended December 31, 2020 filed with the SEC on March 12, 2021, with
the following exceptions.
We maintain an incentive compensation plan under which incentive stock options,
nonqualified stock options and restricted stock units ("RSUs") are granted
primarily to employees and non-employee consultants. Stock-based compensation
expense for stock-based awards is based on the grant date fair value of the
awards. We determine the fair value of RSUs based on the closing value of our
stock price listed on Nasdaq at the date of the grant.
We estimate the fair value of stock option awards on the grant date using the
Black-Scholes option-pricing model. The fair value of stock option awards is
recognized as compensation expense on a straight-line basis over the
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requisite service period in which the awards are expected to vest and
forfeitures are recognized as they occur. Stock option awards that include a
service condition and a performance condition are considered expected to vest
when the performance condition is probable of being met. Compensation expense
associated with performance awards that are determined to be probable of
achievement is recognized over the requisite service period, provided the
grantee remains an employee or consultant of the Company through each applicable
vesting date. For performance awards not initially assessed as probable of
achievement, we record a cumulative adjustment to compensation expense in the
period we change our determination that a performance condition becomes probable
of being achieved. We cease recognition of compensation expense in any periods
where we determine the attainment of a performance condition is no longer
probable. If the performance goals are determined to be improbable, no
compensation expense is recognized and any previously recognized compensation
expense is reversed.
Recent Accounting Pronouncements
See Note 2, "Summary of Significant Accounting Policies" in our Notes to the
Unaudited Condensed Consolidated Financial Statements included in Part 1, Item 1
of this Quarterly Report on Form 10-Q for a discussion of recent accounting
pronouncements.
JOBS Act accounting election
We are an "emerging growth company," as defined in the Jumpstart Our Business
Startups Act of 2012, or the JOBS Act. Under the JOBS Act, emerging growth
companies can delay adopting new or revised accounting standards issued
subsequent to the enactment of the JOBS Act until such time as those standards
apply to private companies. We have elected not to use this extended transition
period. We intend to rely on other exemptions provided by the JOBS Act,
including without limitation, not being required to comply with the auditor
attestation requirements of Section 404(b) of the Sarbanes-Oxley Act of 2002.
Based on the most recent measurement date, we will become a large accelerated
filer on December 31, 2021 and no longer qualify as an emerging growth company.
Item 3.  Quantitative and Qualitative Disclosures about Market Risk.
Interest rate risk
Customer financing exposure. We are indirectly exposed to interest rate risk
because many of our customers depend on debt financings to purchase our
platforms and systems. An increase in interest rates could make it challenging
for our customers to obtain the capital necessary to make such purchases on
favorable terms, or at all. Such factors could reduce demand or lower the price
we can charge for our platforms and systems, thereby reducing our net sales and
gross profit.
Bank deposit and money market exposure. As of September 30, 2021, we had cash
and cash equivalents, including restricted cash, of $197.3 million, which
consisted primarily of money market funds and bank deposits. The primary
objective of our investment is to preserve principal and provide liquidity.
These money market funds, and bank deposits generate interest income at variable
rates below 1%. A hypothetical 100 basis point decrease in interest rates would
have no material effect on our interest income and financial results.
Foreign currency risk
Through September 30, 2021, we did not generate any revenue denominated in
foreign currencies. As we expand our presence in international markets, to the
extent we are required to enter into agreements denominated in a currency other
than the US dollar, our results of operations and cash flows may increasingly be
subject to fluctuations due to changes in foreign currency exchange rates and
may be adversely affected in the future due to changes in foreign exchange
rates. To date, we have not entered into any hedging arrangements with respect
to
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foreign currency risk. As our international operations grow, we will continue to
reassess our approach to manage our risk relating to fluctuations in currency
rates.
Item 4.  Controls and Procedures.
Evaluation of Disclosure Controls and Procedures
Due to the COVID 19 pandemic, a significant portion of our employees are now
working from home, and some employees are also under federal, state, local
guidelines or other restrictions. We activated business continuity plans in
order to mitigate the impact to our control environment, operating procedures,
data and internal controls. The design of our processes and controls allow for
remote execution with accessibility to secure data.
We carried out an evaluation, under the supervision and with the participation
of management, including our Chief Executive Officer and Chief Financial
Officer, of the effectiveness of our "disclosure controls and procedures" as
defined in Exchange Act Rule 13a-15(e) and 15d-15(e). Based on that evaluation,
our Chief Executive Officer and Chief Financial Officer concluded that as of
September 30, 2021 our disclosure controls and procedures were effective at a
reasonable assurance level to ensure that information required to be disclosed
by us in reports that we file or submit under the Exchange Act is recorded,
processed, summarized, and reported within the time periods specified in SEC
rules and forms, and that such information is accumulated and communicated to
our management, including our Chief Executive Officer and Chief Financial
Officer, as appropriate, to allow timely decisions regarding required
disclosure.
Changes in Internal Control over Financial Reporting
We also carried out an evaluation, under the supervision and with the
participation of management, including our Chief Executive Officer and Chief
Financial Officer, of our "internal control over financial reporting" as defined
in Exchange Act Rule 13a-15(f) and 15d-15(f) to determine whether any changes in
our internal control over financial reporting occurred during the three months
ended September 30, 2021 that materially affected, or are reasonably likely to
materially affect, our internal control over financial reporting. Based on that
evaluation, there were no such changes in our internal control over financial
reporting that occurred during the three months ended September 30, 2021 despite
the fact that many of our associates are working remotely due to the COVID-19
pandemic. We continue to monitor and assess the COVID-19 situation on our
internal controls to minimize potential impacts on their design and operating
effectiveness.
Limitations on the Effectiveness of Controls
Control systems, no matter how well designed and operated, can provide only
reasonable, not absolute, assurance that the control systems' objectives are
being met. Further, the design of any system of controls must reflect the fact
that there are resource constraints, and the benefits of all controls must be
considered relative to their costs. Because of the inherent limitations in all
control systems, no evaluation of controls can provide absolute assurance that
all control issues and instances of fraud, if any, within our Company have been
detected. These inherent limitations include the realities that judgments in
decision-making can be faulty and that breakdowns can occur because of error or
mistake. Control systems can also be circumvented by the individual acts of some
persons, by collusion of two or more people, or by management override of the
controls. The design of any system of controls is also based in part upon
certain assumptions about the likelihood of future events, and there can be no
assurance that any design will succeed in achieving its stated goals under all
potential future conditions. Over time, controls may become inadequate because
of changes in conditions or deterioration in the degree of compliance with
policies or procedures.
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