The following discussion and analysis of our financial condition and results of
operations should be read in conjunction with (i) our unaudited condensed
consolidated financial statements and related notes appearing elsewhere in this
Quarterly Report on Form 10-Q and (ii) our audited financial statements and
related notes and management's discussion and analysis of financial condition
and results of operations included in our Annual Report on Form 10-K for the
year ended December 31, 2020 filed with the Securities and Exchange Commission
(the "SEC"), on March 1, 2021. Unless the context requires otherwise, references
in this Quarterly Report on Form 10-Q to the "Company," "Cortexyme," "we," "us"
and "our" refer to Cortexyme, Inc. In preparing the Management's Discussion and
Analysis below, we presume the readers have access to and have read the
Management's Discussion and Analysis in our Prospectus, pursuant to Instruction
2 to paragraph (b) of Item 303 of Regulation S-K.

Forward-Looking Statements



This Quarterly Report on Form 10-Q contains forward-looking statements within
the meaning of Section 27A of the Securities Act of 1933, as amended and Section
21E of the Securities Exchange Act of 1934, as amended (the "Exchange Act"). All
statements other than statements of historical facts contained in this quarterly
report, including statements regarding our future results of operations and
financial position, business strategy, prospective products, product approvals,
research and development costs, timing and likelihood of success, plans and
objectives of management for future operations, adequacy of our cash resources
and working capital, impact of COVID-19 pandemic on our research and development
activities and business operations, and future results of anticipated products,
are forward-looking statements. These statements involve known and unknown
risks, uncertainties and other important factors that may cause our actual
results, performance or achievements to be materially different from any future
results, performance or achievements expressed or implied by the forward-looking
statements.

In some cases, you can identify forward-looking statements by terms such as
"may," "will," "should," "expect," "plan," "anticipate," "could," "intend,"
"target," "project," "contemplates," "believes," "estimates," "predicts,"
"potential" or "continue" or the negative of these terms or other similar
expressions. The forward-looking statements in this quarterly report are only
predictions. We have based these forward-looking statements largely on our
current expectations and projections about future events and financial trends
that we believe may affect our business, financial condition and results of
operations. These forward-looking statements are subject to certain risks and
uncertainties that could cause actual results to differ materially from those
anticipated in the forward-looking statements. Factors that might cause such a
difference include, but are not limited to, those discussed in this report in
Part II, Item 1A -"Risk Factors," and in our Annual Report on Form 10-K for the
year ended December 31, 2020 and elsewhere in this Quarterly Report on Form 10-Q
and in other filings we make with the SEC from time to time. The events and
circumstances reflected in our forward-looking statements may not be achieved or
occur and actual results could differ materially from those projected in the
forward-looking statements. Moreover, we operate in an evolving environment. New
risk factors and uncertainties may emerge from time to time, and it is not
possible for management to predict all risk factors and uncertainties. These
forward-looking statements speak only as of the date hereof. Except as required
by applicable law, we do not plan to publicly update or revise any
forward-looking statements contained herein, whether as a result of any new
information, future events, changed circumstances or otherwise.

Overview



We are a clinical stage biopharmaceutical company with a growing pipeline of
therapeutics in Alzheimer's disease and other degenerative diseases. Our
approach is based on the seminal discovery of the presence of Porphyromonas
gingivalis ("P. gingivalis"), and its secreted toxic virulence factor proteases,
called gingipains, in the brains of greater than 90% of Alzheimer's patients.
Additionally, we and other researchers have observed that P. gingivalis
infection causes Alzheimer's and Parkinson's pathology in animal models, and
these effects have been successfully treated with a gingipain inhibitor in
preclinical studies. Our proprietary lead drug candidate, atuzaginstat (COR388),
is an orally administered, brain-penetrating small molecule gingipain protease
inhibitor.

Alzheimer's Disease

On October 26, 2021, we announced top-line results from our global Phase 2/3
clinical trial of atuzaginstat, called the GAIN (GingipAIN Inhibitor for
Treatment of Alzheimer's Disease) trial, in mild to moderate Alzheimer's
patients. The 643-participant study did not meet statistical significance in its
co-primary cognitive and functional endpoints as measured by ADAS-Cog11 and
ADCS-ADL at end of the treatment period in the overall cohort. The study did
show a dose response for a pre-specified subgroup of participants with P.
gingivalis DNA detectable in saliva at baseline (n=242), with a 57% slowing of
cognitive decline as measured by ADAS-Cog11 in the 80 mg BID arm (p=0.02) and a
42% slowing in the 40 mg BID arm (p=0.07) vs. placebo. Significant benefits in
this subgroup were not seen on the other co-primary, ADCS-ADL. The study also
indicated that most adverse events were mild to moderate in severity. The most
common were gastrointestinal, such as diarrhea in up to 16% and nausea in 6% of
participants treated with atuzaginstat vs. 3% and 2% of placebo participants,
respectively. Atuzaginstat was associated with dose-related liver enzyme
elevations >3X the upper limit of normal: 2% on placebo, 7% on 40 mg BID, and
15% on 80 mg BID. These

                                       17

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elevations alone were not clinically significant, and virtually all participants
were asymptomatic. Two participants in the 80 mg BID arm had concomitant
bilirubin elevations without alternative explanation. Lab changes resolved while
participants remained on drug or after withdrawal without any known long-term
adverse effects.

We are actively engaging with regulators, the medical community, patient
advocacy groups, and other key stakeholders to advance development of
atuzaginstat and the second-generation lysine-gingipain inhibitor COR588, which
is differentiated by novel compound properties and once daily administration. We
are reviewing plans for the further development of atuzaginstat and expect to
have additional information in the coming quarters.

Alzheimer's disease represents one of the most significant unmet medical needs
of our time and prior to the approval of Aduhelm on June 7, 2021, there were no
marketed treatments that address the underlying cause of the disease. The
disease afflicts an estimated 5.7 million people in the United States and more
than 30 million people worldwide and is expected to grow to 14.0 million people
in the United States by 2050. The direct costs of caring for individuals with
Alzheimer's disease and other dementias in the United States were estimated to
total $300 billion in 2020 and are projected to increase to $1.1 trillion by
2050, according to the Alzheimer's Association. Historical challenges in
developing effective therapeutics for this disease include a poor understanding
of disease causation and animal models that do not translate to efficacy in
humans. We believe our novel approach can overcome these challenges by targeting
an upstream cause of neuroinflammation and neurodegeneration. Our drug candidate
has demonstrated proof of concept in a new physiological animal model that we
believe is representative of human Alzheimer's disease pathology.

Atuzaginstat is the first and only selective small molecule inhibitor of
gingipain activity being investigated in clinical trials for the treatment of
neurodegenerative disease. Atuzaginstat is designed to target an upstream driver
of multiple pathological pathways, including amyloid beta production,
inflammation and neurodegeneration, in contrast to mechanisms of action
targeting downstream effects, such as amyloid plaques and tau tangles, which
have been largely unsuccessful in clinical trials to date. Accordingly, we
believe atuzaginstat could represent a disease-modifying therapy for the chronic
treatment of neurodegenerative disease.

Periodontal Disease



The GAIN Trial sub-study in periodontal disease demonstrated a trend to benefit
on the primary clinical endpoint of pocket depth in the same pre-specified
sub-group with P. gingivalis DNA detectable in saliva. Further results will
inform the next stage of development in periodontitis and will be presented at a
future scientific conference.

P. gingivalis has been identified as a key pathogen in the development of
periodontal disease. Periodontal disease is a common age-related disease
affecting nearly 50% of the population over 50 years of age, or 65 million
people, in the United States. The disease presents with symptoms including
chronic inflammation, degeneration of gum tissue and tooth loss. Periodontal
disease is associated with increased risk of cardiovascular disease, diabetes
and certain cancers. The disease is often chronic and recurring due to
persistent bacterial infection and antibiotic resistance. Current standard of
care for the treatment of periodontal disease commonly involves scaling and root
planning to remove bacterial plaque and tartar, in addition to local delivery of
antibiotics in some cases. Atuzaginstat (COR388) reduced periodontal disease and
associated bone loss in multiple animal models of periodontal disease. Target
engagement and efficacy data for atuzaginstat (COR388) in aged dogs was
published in January 2020 in the journal Pharmacology Research and Perspectives.

COR588 is a second generation brain penetrant lysine gingipain inhibitor which
has completed IND enabling studies. We began Phase 1 studies utilizing COR588 in
September 2021. We presently expect to study COR588 in periodontal disease with
potential utilization in additional indications.

Parkinson's Disease



Parkinson's disease affects more than 1 million people in the United States and
10 million worldwide. Currently approved treatments are limited to primarily
managing symptoms. Based upon published literature and our research to date, our
start-up activities continue for a placebo controlled multicenter Phase 2 study
in Parkinson's disease called the PEAK (Gingipain inhibitor for treatment of
PArKinson's' disease) Trial. In light of the GAIN Trial results, we are
incorporating our experience in the GAIN Trial into the potential study design
for PEAK.

Coronavirus

A 3CLpro inhibitor, COR803, has been selected as lead compound for treatment of coronavirus infections, including COVID-19 disease, caused by SARS-CoV-2 infection. COR803 is a novel patent-pending small molecule 3CLpro inhibitor discovered and developed by us based on our expertise in cysteine protease inhibition. 3CLpro, or Mpro, is a validated antiviral drug


                                       18

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target shown to be essential in viral replication of SARS-CoV-2. COR803 has
beneficial properties over other COVID-19 therapeutics and 3CLpro inhibitors in
development including; covalent irreversible binding of the viral 3CLpro enzyme;
high potency of antiviral EC90 of 30 nM in human lung cell viral replication
assays; highly selective for 3CLpro versus other cellular proteases including
Cathepsin L; and excellent systemic exposure utilizing intranasal or
subcutaneous administration, allowing for clinical use in multiple settings such
as outpatient and inpatient.

Pipeline

Two arginine gingipain inhibitors, COR788 and COR822, have been selected as lead
compounds to progress toward IND-enabling studies, including manufacturing
scale-up and dose range-finding toxicology studies based on their properties of
potency, selectivity, pharmacologic efficacy, and pharmacokinetics. Arginine
gingipain is a distinct target associated with P. gingivalis that contributes to
bacterial survival, replication and toxicity. An arginine gingipain inhibitor
may be used as monotherapy in new indications or potentially additively with
lysine gingipain inhibitors, like atuzaginstat. Both molecules have novel
composition of matter (patent pending), are brain penetrant and orally
available.

Partial Clinical Hold



On February 12, 2021, we received a letter from the FDA stating that a partial
clinical hold has been placed on atuzaginstat (COR388) impacting the open-label
extension (OLE) phase of the GAIN Trial. Under the hold, no new participants
were enrolled in the OLE and currently enrolled OLE participants were
discontinued. Participants in the fully enrolled (N=643) double-blind,
placebo-controlled randomized phase of the GAIN Trial continued to receive study
drug at their assigned dose. The partial clinical hold was initiated following
the review of hepatic adverse events in the GAIN trial by the FDA. These events
have been reversible and without any known long-term adverse effects for the
participants. We plan to review the GAIN Trial results with the FDA and other
regulators as part of a discussion of the overall development program for
atuzaginstat.

Business Update Regarding COVID-19



The current COVID-19 pandemic has presented a substantial public health and
economic challenge around the world and is affecting our employees, patients,
communities and business operations, as well as the U.S. economy and financial
markets. The full extent to which the COVID-19 pandemic will directly or
indirectly impact our business, results of operations and financial condition
will depend on future developments that are highly uncertain and cannot be
accurately predicted, including new information that may emerge concerning
COVID-19, the actions taken to contain it or treat its impact and the economic
impact on local, regional, national and international markets.

To date, our employees, vendors and clinical trial sites have been able to
advance our GAIN clinical trial and complete enrollment. At this time the impact
of the COVID-19 pandemic has not resulted in changes to our previously stated
analysis timelines for the GAIN trial. We are continuing to assess the potential
impact of the COVID-19 pandemic on our business and operations, including our
expenses, preclinical operations and clinical trials. Our office-based employees
have been working primarily from home since mid-March 2020, while ensuring
essential staffing levels in our operations remain in place, including
maintaining key personnel in our lab facility. We have implemented plans to
enable all employees to voluntarily return to work in our offices and lab
facility which include safety protocols, such as face coverings, social
distancing, frequent cleaning, and COVID-19 testing. Employee have been
gradually returning to the office on a voluntary basis since June 2021. We
continue to assess the risks which take into account applicable public health
authority and local government guidelines and are designed to ensure community
and employee safety. However, the effects of the COVID-19 pandemic continue to
rapidly evolve and even if our employees more broadly return to work in our
offices and lab facility, we may have to resume a more restrictive remote work
model, whether as a result of spikes or surges in COVID-19 infection or
hospitalization rates or public authority mandates. We are not currently
experiencing any significant supply chain disruptions due to COVID-19. We have
diversified our vendor relationships geographically for both starting materials
and manufacturing. However, in the future, the ongoing COVID-19 pandemic, may
result in the inability of some of our suppliers to deliver drug supplies on a
timely basis. We have taken and continues to take proactive measures to maintain
the integrity of its ongoing clinical trial. To potentially mitigate some of the
risks of COVID-19 and based on interest and the ability to maintain milestone
timelines, we enrolled an additional 73 subjects in the GAIN trial. Despite
these efforts, the COVID-19 pandemic could impact timelines, subject follow up
visits and study completion. We will continue to monitor the COVID-19 situation
and its impact on the ability to continue the development of, and seek
regulatory approvals for, our product candidates.

Financial Overview



Since commencing material operations in 2014, we have devoted substantially all
of our efforts and financial resources to building our research and development
capabilities, establishing our corporate infrastructure and most recently,
executing our Phase

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1a, Phase 1b and Phase 2/3 clinical trials of atuzaginstat and increasing investment in new indications for atuzaginstat and clinical trials for COR588.



To date, we have not generated any revenue and we have never been profitable. We
have incurred net losses since the commencement of our operations. As of
September 30, 2021, we had an accumulated deficit of $213.2 million. We incurred
a net loss of $21.7 million and $66.5 million in the three and nine months ended
September 30, 2021. We do not expect to generate product revenue unless and
until we obtain marketing approval for and commercialize a drug candidate, and
we cannot assure you that we will ever generate significant revenue or profits.

To date, we have financed our operations primarily through the issuance and sale
of convertible promissory notes and redeemable convertible preferred stock and
common stock. From inception through September 30, 2021, we received net
proceeds of approximately $294.9 million from the issuance of redeemable
convertible preferred stock, convertible promissory notes and common stock. This
includes net proceeds of approximately $117.6 million from the issuance and sale
of common stock in a private placement to certain accredited investors received
in February 2020.

As of September 30, 2021 and December 31, 2020, we had cash, cash equivalents
and short-term investments of $114.4 million and $133.8 million, respectively.
The balances exclude long-term investments of $26.1 million and $50.5 million as
of those same periods. Our cash equivalents, short-term and long-term
investments are held in money market funds, certificate of deposits, repurchase
agreements, investments in corporate debt securities, municipal debt obligations
and government agency obligations.

We believe that our existing cash, cash equivalents and investments will be sufficient to fund our planned operations through 2023. We have based this estimate on assumptions that may prove to be wrong, and we could utilize our available capital resources sooner than we expect.



We expect to incur substantial expenditures in the foreseeable future as we
expand our pipeline and advance our drug candidates through clinical
development, the regulatory approval process and, if approved, commercial launch
activities. Specifically, in the near term we expect to incur substantial
expenses relating to our ongoing and planned clinical trials, the development
and validation of our manufacturing processes, and other development activities.

We will need substantial additional funding to support our continuing operations
and pursue our development strategy. Until such time as we can generate
significant revenue from sales of an approved drug, if ever, we expect to
finance our operations through the sale of equity, debt financings or other
capital sources. Adequate funding may not be available to us on acceptable
terms, or at all. If we fail to raise capital or enter into such agreements as,
and when, needed, we may have to significantly delay, scale back or discontinue
the development and commercialization of our drug candidates or delay our
efforts to expand our product pipeline.

Critical Accounting Policies and Significant Judgments and Estimates



Our management's discussion and analysis of our financial condition and results
of operations is based on our consolidated financial statements, which have been
prepared in accordance with U.S. generally accepted accounting principles
("GAAP"). The preparation of these consolidated financial statements requires us
to make estimates and assumptions that affect the reported amounts of assets and
liabilities and the disclosure of contingent assets and liabilities at the date
of the financial statements, as well as the reported expenses incurred during
the reporting periods. Our estimates are based on our historical experience and
on various other factors that we believe are reasonable under the circumstances,
the results of which form the basis for making judgments about the carrying
value of assets and liabilities that are not readily apparent from other
sources. Actual results may differ from these estimates under different
assumptions or conditions.

We believe that the assumptions and estimates associated with accrued research and development expenditures and stock-based compensation have the most significant impact on our condensed consolidated financial statements. Therefore, we consider these to be our critical accounting policies and estimates.



The following critical accounting policies are described under the heading
"Management's Discussion and Analysis of Financial Condition and Results of
Operations-Critical Accounting Policies, Significant Judgements and Use
Estimates" in our 2020 Annual Report on Form 10-K and the notes to the unaudited
condensed consolidated financial statements included in Item 1, "Unaudited
Financial Statements," of this Quarterly Report on Form 10-Q. We believe that of
our critical accounting policies, the

                                       20

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following accounting policies are the most critical to fully understanding and evaluating our financial condition and results of operations:



?
Research and Development Expenses;
?
Stock-Based Compensation Expense; and
?
Income Taxes

There have been no material changes in our critical accounting policies during the nine months ended September 30, 2021, as compared to those disclosed in "Management's Discussion and Analysis of Financial Condition and Results of Operations - Critical Accounting Policies, Significant Judgments and Use of Estimates" in our Annual Report.

Components of Results of Operations

Operating Expenses

Research and Development Expenses



Our research and development expenses consist of expenses incurred in connection
with the research and development of our research programs. These expenses
include payroll and personnel expenses, including stock-based compensation, for
our research and product development employees, laboratory supplies, product
licenses, consulting costs, contract research, regulatory, quality assurance,
preclinical and clinical expenses, allocated rent, facilities costs and
depreciation. We expense both internal and external research and development
costs as they are incurred. Non-refundable advance payments and deposits for
services that will be used or rendered for future research and development
activities are recorded as prepaid expenses and recognized as an expense as the
related services are performed.

To date, our research and development expenses have supported the advancement of
atuzaginstat and our other drug candidates in preclinical development. We expect
that at least for the foreseeable future, a substantial majority of our research
and development expense will support the clinical and regulatory development of
our lead candidate atuzaginstat.

We expect our research and development expenses to increase substantially during
the next few years as we seek to complete existing and initiate additional
clinical trials, pursue regulatory approval of atuzaginstat and advance other
drug candidates into clinical development. Over the next few years, we expect
our preclinical, clinical and contract manufacturing expenses to increase
significantly relative to what we have incurred to date. Predicting the timing
or the final cost to complete our clinical program or validation of our
manufacturing and supply processes is difficult and delays may occur because of
many factors.

The duration, costs and timing of our clinical trial and development of our product candidates will depend on a variety of factors that include, but are not limited to, the following:



?
per patient trial costs;
?
biomarker analysis costs;
?
the cost and timing of drug manufacturing for the trials;
?
the number of patients that participate in the trials;
?
the number of sites included in the trials;
?
the countries in which the trials are conducted;
?
the length of time required to enroll eligible patients;
?
the screening, randomization, drop-out or discontinuation rates of patients;

                                       21

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?
potential additional safety monitoring or other studies requested by regulatory
agencies; and
?
the efficacy and safety profile of the product candidates.

In addition, the probability of success for each product candidate will depend
on numerous factors, including safety, efficacy, competition, manufacturing
capability and commercial viability. We will determine which programs to pursue
and how much to fund each program in response to the scientific and clinical
success of each product candidate, as well as an assessment of each product
candidate's commercial potential.

Because our product candidates are still in clinical development and the outcome
of these efforts is uncertain, we cannot estimate the actual amounts necessary
to successfully complete the development and commercialization of our product
candidates or whether, or when, we may achieve profitability.

The COVID-19 pandemic may have an adverse impact on our operations, supply chains, our current or future clinical trials, and increase our expenses, including as a result of impacts associated with preventive and precautionary measures that we, other businesses and governments are taking.

General and Administrative



General and administrative expenses consist principally of personnel-related
costs, including payroll and stock-based compensation, for personnel in
executive, finance, human resources, business and corporate development, and
other administrative functions, professional fees for legal, consulting,
insurance and accounting services, allocated rent and other facilities costs,
depreciation, and other general operating expenses not otherwise classified as
research and development expenses.

We anticipate that our general and administrative expenses will increase as the size of our business operations grows to support additional research and development activities.

Interest Income

Interest and other income, net consists primarily of interest earned on our short-term and long-term investments portfolio.

Results of Operations

Comparison of the three months ended September 30, 2021 to the three months ended September 30, 2020

The following sets forth our results of operations for the three months ended September 30, 2021 and 2020 (in thousands):





                                              Three Months Ended
                                                 September 30,                    Change
                                             2021             2020            $             %
Operating expenses:
  Research and development                $   14,038       $   16,983     $  (2,945 )       (17.3 ) %
  General and administrative                   7,639            4,929         2,710          55.0   %
Loss from operations                         (21,677 )        (21,912 )         235          (1.1 ) %
Interest income                                  128              406          (278 )       (68.5 ) %
Other expense, net                              (157 )              -          (157 )       100.0   %
Net loss                                  $  (21,706 )     $  (21,506 )        (200 )         0.9   %




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Research and Development Expenses (in thousands):





                                            Three Months Ended September 30,                Change
                                               2021                  2020               $             %
Direct research and development
expenses:
  Atuzaginstat                            $         4,502       $        11,985     $  (7,483 )       (62.4 ) %
  COR588                                            1,662                   526         1,136         216.0   %
  Other direct research costs                         557                   520            37           7.1   %
Indirect research and development
expenses:
  Personnel related (including                                                          3,009          86.3   %
  stock-based compensation)                         6,497                 

3,488


  Facilities and other research and                                                       356          76.7   %
  development expenses                                820                   

464

Total research and development expenses $ 14,038 $ 16,983 $ (2,945 ) (17.3 ) %

Research and development expenses were $14.0 million for the three months ended September 30, 2021, compared to $17.0 million for the three months ended September 30, 2020, a decrease of $3.0 million.



The costs for atuzaginstat, currently in our GAIN Phase 2/3 clinical trial,
decreased $7.5 million from the prior year due to decreases of $1.7 million in
drug manufacturing costs and $5.8 million in clinical trial costs as patients
continue to conclude participation in the GAIN trial. The GAIN trial is expected
to substantially conclude in the fourth quarter 2021 and we anticipate continued
overall expenses to decrease as patients complete the trial protocols and the
final top-line data read out occurs.

In the three months ended September 30, 2021, we initiated our clinical trial
for our new compound COR588. COR588 is a unique small molecule lysine gingipain
inhibitor with likely once daily oral dosing that we intend to position in
periodontal disease and other new indications. We incurred $1.7 million in costs
for the three months ended September 30, 2021 for Phase 1 clinical study costs
compared to $0.5 million for the three months ended September 30, 2020. The
variance of $1.1 million was caused by increases of $0.4 million in drug
manufacturing costs, $0.6 million in clinical trial costs and $0.1 million for
preclinical and IND enabling studies.

Other direct research costs remained flat against the same period a year ago and
is related primarily to pipeline development and preclinical work in the three
months ended September 30, 2021.

We incurred $6.5 million in personnel related expenses in the three months ended
September 30, 2021 compared to $3.5 million in the same period for 2020. The
increase of $3.0 million is due to a $1.1 million increase in personnel related
expenses for increased headcount and a $1.9 million increase in allocated
stock-based compensation costs.

Facilities and other research and development expenses increased $0.4 million
from the three months ended September 30, 2020 to $0.8 million due to regulatory
and quality assurance consulting.

General and Administrative Expenses



General and administrative expenses were $7.6 million for the three months ended
September 30, 2021 compared to $4.9 million for the three months ended September
30, 2020. The increase of $2.7 million was due to increases in our employee
headcount, which was comprised of compensation and benefits costs of $0.3
million and $1.5 million in allocated stock-based compensation expense, $0.2
million in consulting expense, $0.4 million in investor relations expense, $0.2
million insurance expense and $0.1 million in other general and administrative
expenses.

Interest Income

Interest income was $0.1 million for the three months ended September 30, 2021 compared to $0.4 million for the three months ended September 30, 2020. The decrease was a result of decreased average cash and investment balances and decreases in the overall yield of the investment portfolio.

We anticipate continued historic low overall yields from our investment portfolio in future quarters, specifically the credit securities markets.


                                       23

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Other Expense



Other expense increased by $0.2 million for the three months ended September 30,
2021 compared to $0 for the three months ended September 30, 2020. The increase
was primarily due to unrealized losses resulting from changes in foreign
exchange rates.

Comparison of the nine months ended September 30, 2021 to the nine months ended September 30, 2020

The following sets forth our results of operations for the nine months ended September 30, 2021 and 2020 (in thousands):





                                          Nine Months Ended September
                                                      30,                         Change
                                             2021             2020            $             %
Operating expenses:
  Research and development                $   45,582       $   45,450     $     132           0.3   %
  General and administrative                  21,192           12,591         8,601          68.3   %
Loss from operations                         (66,774 )        (58,041 )      (8,733 )        15.0   %
Interest income                                  515            1,747        (1,232 )       (70.5 ) %
Other expense, net                              (287 )              -          (287 )       100.0   %
Net loss                                  $  (66,546 )     $  (56,294 )   $ (10,252 )        18.2   %



Research and Development Expenses (in thousands):





                                             Nine Months Ended September 30,                Change
                                               2021                  2020               $             %
Direct research and development
expenses:
  Atuzaginstat                            $        19,607       $        32,943     $ (13,336 )       (40.5 ) %
  COR588                                            4,295                   842         3,453         410.1   %
  Other direct research costs                       2,404                 1,772           632          35.7   %
Indirect research and development
expenses:
  Personnel related (including                     17,481                 

8,801 8,680 98.6 %

stock-based compensation)


  Facilities and other research and                 1,795                 1,092           703          64.4   %

development expenses Total research and development expenses $ 45,582 $ 45,450 $ 132

           0.3   %




Research and development expenses were $45.6 million for the nine months ended September 30, 2021, compared to $45.5 million for the nine months ended September 30, 2020, an increase of $0.1 million.



The costs for atuzaginstat development, currently in our GAIN Phase 2/3 clinical
trial, decreased $13.3 million from the same period in the prior year due to
decreases of $4.3 million in drug manufacturing costs and $9.0 million in
clinical trial costs. The GAIN trial is expected to substantially conclude in
the fourth quarter 2021 and we anticipate continued overall expenses to decrease
as patients complete the trial protocols and the final top-line data read out
occurs.

For the nine months ended September 30, 2021, we initiated our clinical trial
for our new compound COR588. COR588 is a unique small molecule lysine gingipain
inhibitor with likely once daily oral dosing that we intend to position in
periodontal disease and other new indications. We incurred $4.3 million in costs
for the nine months ended September 30, 2021, an increase of $3.5 million from
the same period in the prior year. This increase was primarily due to $1.4
million in drug manufacturing costs, $0.8 million in clinical trial costs and
$1.3 million for preclinical and IND enabling studies. We expect increased costs
for this compound as it moves through the Phase 1 clinical study which began in
September, 2021. Additionally, other direct research costs increased $0.6
million primarily due to pipeline development and preclinical research.

For the nine months ended September 30, 2021, we experienced a net increase of
$8.7 million in personnel related expenses due to an increase in our employee
headcount which was comprised of an increase in compensation and benefit costs
of $2.8 million and $5.9 million in allocated stock-based compensation costs.

Facilities and other research and development expenses increased $0.7 million
from the nine months ended September 30, 2020 to $1.8 million due to increased
regulatory and quality assurance consulting.

General and Administrative Expenses


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General and administrative expenses increased $8.6 million to $21.2 million for
the nine months ended September 30, 2021 from $12.6 million for the nine months
ended September 30, 2020. The increase in general and administrative expenses
was primarily due to an increase of $7.1 million in personnel costs due to an
increase in our employee headcount which was comprised of an increase in
compensation and benefits costs of $1.1 million and $6.0 million in allocated
stock-based compensation expense, $0.7 million in consulting expense, $0.4
million in investor relations expense and $0.4 million in insurance expense.

Interest Income

Interest income was $0.5 million for the nine months ended September 30, 2021 compared to $1.7 million for the nine months ended September 30, 2020. The decrease was a result of decreased average cash and investment balances and lower yield on those investments.

We anticipate continued historic low overall yields from our investment portfolio in future quarters, specifically the credit securities markets.

Other Expense



Other expense increased by $0.3 million for the nine months ended September 30,
2021 compared to $0 for the nine months ended September 30, 2020. The increase
was primarily due to unrealized losses resulting from changes in foreign
exchange rates.

Liquidity, Capital Resources and Plan of Operations



We have incurred cumulative net losses and negative cash flows from operations
since our inception and anticipate we will continue to incur net losses for the
foreseeable future. As of September 30, 2021, we had an accumulated deficit of
$213.2 million. and we had cash, cash equivalents and investments of $140.6
million.

Based on our existing business plan, we believe that our existing cash, cash
equivalents and investments will be sufficient to fund our anticipated level of
operations through at least 2023. However, our operating plans may change and in
any event we may need to raise substantial additional financing in the future to
fund our operations.

Capital Resources

Our primary use of cash is to fund operating expenses, which consist primarily
of research and development expenditures related to our lead program,
atuzaginstat, and other research efforts, and to a lesser extent, general and
administrative expenditures. Cash used to fund operating expenses is impacted by
the timing of when we pay these expenses, as reflected in the change in our
outstanding accounts payable and accrued expenses.

Our product candidates are still in clinical development and the outcome of
these efforts is uncertain. Accordingly, we cannot estimate the actual amounts
necessary to successfully complete the development and commercialization of our
product candidates or whether, or when, we may achieve profitability. We will
continue to require additional capital to develop our drug candidates and fund
operations for the foreseeable future. We may seek to raise capital through
private or public equity or debt financings, collaborative or other arrangements
with other companies, or through other sources of financing. Adequate additional
funding may not be available to us on acceptable terms or at all. Our failure to
raise capital as and when needed could have a negative impact on our financial
condition and our ability to pursue our business strategies. We anticipate that
we will need to raise substantial additional capital, the requirements of which
will depend on many factors, including:

?
the progress, costs, trial design, results of and timing of our Phase 2/3 GAIN
trial and other clinical trials of atuzaginstat, including our Phase 2 PEAK
trial for Parkinson's disease, our COR588 Phase 1 trial and for potential
additional indications that we may pursue beyond Alzheimer's and Parkinson's
disease;
?
the willingness of the FDA or EMA to accept our Phase 2/3 GAIN trial, as well as
data from our completed and planned clinical and preclinical studies and other
work, as the basis for review and approval of atuzaginstat for Alzheimer's
disease;
?
the outcome, costs and timing of seeking and obtaining FDA, EMA and any other
regulatory approvals;
?
the number and characteristics of drug candidates that we pursue;

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?
our ability to manufacture sufficient quantities of our drug candidates;
?
our need to expand our research and development activities;
?
the costs associated with securing and establishing commercialization and
manufacturing capabilities;
?
the costs of acquiring, licensing or investing in businesses, drug candidates
and technologies;
?
our ability to maintain, expand and defend the scope of our intellectual
property portfolio, including the amount and timing of any payments we may be
required to make, or that we may receive, in connection with the licensing,
filing, prosecution, defense and enforcement of any patents or other
intellectual property rights;
?
our need and ability to retain management and hire scientific and clinical
personnel;
?
the effect of competing drugs and drug candidates and other market developments;
?
our need to implement additional internal systems and infrastructure, including
financial and reporting systems; and
?
the economic and other terms, timing of and success of any collaboration,
licensing or other arrangements into which we may enter in the future.

If we raise additional funds by issuing equity securities, our stockholders will
experience dilution. Any future debt financing into which we enter may impose
upon us additional covenants that restrict our operations, including limitations
on our ability to incur liens or additional debt, pay dividends, repurchase our
common stock, make certain investments and engage in certain merger,
consolidation or asset sale transactions. Any debt financing or additional
equity that we raise may contain terms that are not favorable to us or our
stockholders. If we are unable to raise additional funds when needed, we may be
required to delay, reduce, or terminate some or all of our development programs
and clinical trials. We may also be required to sell or license to others rights
to our drug candidates in certain territories or indications that we would
prefer to develop and commercialize ourselves.

Our ability to raise additional capital may be adversely impacted by potential
worsening global economic conditions and the recent disruptions to, and
volatility in, the credit and financial markets in the United States and
worldwide resulting from the ongoing COVID-19 pandemic. However, based on our
current business plans, we believe that our existing cash, cash equivalents and
investments will be sufficient to fund our planned operations through 2023.

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