Development of a Synthetic Biotic, SYNB8802, for the

Treatment of Enteric Hyperoxaluria.

Lauren Renaud, David Lubkowicz, Sarani Ghoshal, Nick Horvath, Pip

Reeder, Chris Bergeron, Courtney Chen, Michael James, Pat Cantarella,

Mark Charbonneau, Ron Shmueli, JR Gao, Vincent Isabella and Mylene

Perreault.

Synlogic Operating Company, Inc., Cambridge, MA

© 2020 SYNLOGIC. ALL RIGHTS RESERVED. | 1

Disclosures

  • All authors are employees of Synlogic Operating Company, Inc. and are stock and/or share owners of Synlogic, Inc.

© 2020 SYNLOGIC. ALL RIGHTS RESERVED. | 2

Enteric Hyperoxaluria

Disease Overview

Enteric Hyperoxaluria (EH)

  • Enteric hyperoxaluria (EH) is a metabolic disease that results from an excessive absorption of dietary oxalate.
  • EH occurs mainly in patients with underlying gastrointestinal (GI) disorders, including post gastric bypass surgery, inflammatory bowel disease, Crohn's disease, pancreatitis, and short bowel syndrome.
  • Increased GI oxalate absorption results in elevated urinary oxalate levels and contributes to kidney stone formation, nephrocalcinosis, crystallopathy and other adverse renal outcomes.

Hyperoxaluria Kidney stones

Objective: Engineer an Escherichia coli Nissle 1917 strain to metabolize oxalate for the treatment for Enteric Hyperoxaluria

Adapted from Immunity, microbiota and kidney disease. Nat Rev. Nephrol 2019.

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Engineered EcN has the Potential to Consume Oxalate Throughout the GI Tract

GI Based Therapies Have Demonstrated Lowering of Systemic Oxalate

Dietary Oxalate

Oxalate can be absorbed throughout GI tract.

Stomach

oral enzyme

(i.e. Reloxaliase)

Small

oral enzyme

intestine

(i.e. Reloxaliase)

Colon

colonizing microbes

(i.e. O. formigenes)

SYNB8802

Figure 1: Schematic of SYNB8802. EcN was chromosomally modified to integrate OxlT, ScaaE3, OxdC, and Frc under the control of PfnrS. The thyA and several structural genes within the endogenous prophage were deleted from the genome. Abbreviations: EcN: E. coli Nissle, OxlT = oxalate/formate antiporter; ScaaE3 = oxalyl-CoA synthetase; OxdC = oxalate decarboxylase; FRC = formyl-CoA transferase; ATP = adenosine triphosphate; AMP = adenosine monophosphate; PPi = pyrophosphate; ΔthyA = thymidylate synthase knock out.

Intestinal Degradation of Oxalate Throughout GI Tract Could Enhance Oxalate Lowering

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Engineered Strain SYNB8802 Consumes Oxalate and Produces Formate In Vitro

Figure 2: In Vitro 13C-oxalateconsumption and 13C-formateproduction. EcN and SYNB8802 were grown and incubated statically and supernatant samples were removed at 30 and 60 minutes to determine the concentrations of 13C-oxalate and 13C-formate by liquid chromatography-tandem mass spectrometry (LC-MS/MS). Statistical analysis was performed using two-way repeated measures analysis followed by Sidak's multiple comparison test. **p< 0.01, **** p< 0.0001.

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Synlogic Inc. published this content on 23 August 2021 and is solely responsible for the information contained therein. Distributed by Public, unedited and unaltered, on 23 August 2021 17:23:07 UTC.